Job Description P0AFS1 Confidence 97.17% Date Thu Jan 5 11:27:07 GMT 2012 Rank 2 Aligned Residues 288 % Identity 13% Template d1l7va_ SCOP info ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC Resolution 3.20

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.					.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.					.
Query Sequence		R	I	R	Y	G	W	E	L	A	L	A	A	L	L	V	I	E	I	V	A	F	G	A	I	N	P	R	M	L	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	L	F	S	T	S	D	F	I	C	I	G	I	V	A	L	P	L	T	M	V	I	V	.	.	S	G	G	I	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.					.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.					.
Template Conservation
Template Sequence		R	Q	N	I	R	W	L	L	C	L	S	V	L	X	L	L	A	L	L	L	S	L	C	A	G	E	Q	W	I	S	P	G	D	W	F	T	P	R	G	E	L	F	V	W	Q	I	R	L	P	R	T	L	A	V	L	L	V	G	A	A	L	A	I	S	G	A	V	X	Q	A	L	F	E	N	P	L	A	E	P	G
Template Known Secondary structure																									B	S	S	S	B			S	G	G	G	S	S	T	T	T	T	T					T																											T		T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	S	F	G	S	T	I	G	L	C	A	I	A	L	G	V	L	F	Q	S	G	V	P	M	P	L	A	I	L	L	T	L	L	L	G	A	L	C	G	L	I	N	A	G	L	I	I	Y	T	K	V	N	P	L	V	I	T	L	G	T	L	Y	L	F	A	G	S	A	L	L	L	S	G	M	A	G	A	T	G
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		L	L	G	V	S	N	G	A	G	V	G	L	I	A	A	V	L	L	G	Q	G	Q	L	P	N	W	A	L	G	L	C	A	I	A	G	A	L	I	I	T	L	I	L	L	R	F	A	R	R	.	H	L	S	T	S	R	L	L	L	A	G	V	A	L	G	I	I	C	S	A	L	X	T	W	A	I	Y	F	S	T
Template Known Secondary structure		T	T	T															T	S		T	T																												.	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	G	I	G	G	F	P	M	A	F	T	D	F	A	N	L	D	V	L	G	L	P	V	P	L	I	I	F	L	I	C	L	L	V	F	W	L	W	L	H	K	T	H	A	G	R	N	V	F	L	I	G	Q	S	P	R	V	A	L	Y	S	A	I	P	V	N	R	T	L	C	A	L	Y	A	M	T	G	L	A
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		S	V	D	L	R	Q	L	X	Y	W	X	X	G	G	F	G	G	V	D	W	R	Q	S	W	L	X	L	A	L	I	P	V	L	L	W	I	C	C	.	.	.	.	.	.	Q	S	R	P	X	N	X	L	A	L	G	E	I	S	A	R	Q	L	G	L	P	L	W	F	W	R	N	V	L	V	A	A	T	G	W	X
Template Known Secondary structure													T				T	T			G	G	G																	.	.	.	.	.	.																		T	T
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		222	.	.	.	.	.	.	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.					.	.	290	.	.	.	.	.
Predicted Secondary structure											.	.																																																										.	.	.	.
Query SS confidence											.	.																																																										.	.	.	.
Query Sequence		S	A	V	A	A	V	L	L	V	.	.	S	Y	F	G	S	A	R	S	D	L	G	A	S	F	L	M	P	A	I	T	A	V	V	L	G	G	A	N	I	Y	G	G	S	G	S	I	I	G	T	A	I	A	V	L	L	V	G	Y	L	Q	Q	G	L	Q	M	A	G	.	.	.	.	V	P	N	Q	V	S	S	A
Query Conservation											.	.																																																										.	.	.	.
Alig confidence											.	.																									.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	V	S	V	A	L	A	G	A	I	G	F	I	G	L	V	I	P	H	I	L	R	L	C	G	L	T	D	H	R	V	L	L	P	.	.	.	.	.	.	.	.	.	.	.	.	G	C	A	L	A	G	A	S	A	L	L	L	A	D	I	V	A	R	L	A	L	A	A	A	E	L	P	I	G	V	V	T	A
Template Known Secondary structure														S	S	S	S									T	T			S							.	.	.	.	.	.	.	.	.	.	.	.																				S		S	S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.													.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		296	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	A	L	L	I	V	V	V	V	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	G	A	P	V	F	I	W	L	L	L	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions