Job Description P0AFS1 Confidence 97.36% Date Thu Jan 5 11:27:07 GMT 2012 Rank 1 Aligned Residues 285 % Identity 13% Template c2nq2A_ PDB info PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter. Resolution 2.40 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.												.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	W	E	L	A	L	A	A	L	L	V	I	E	I	V	A	F	G	A	I	N	P	R	M	.	.	.	.	.	.	L	D	L	N	M	L	L	F	S	T	S	D	F	I	C	I	G	I	V	A	L	P	L	T	M	V	I	V	S	G	G	I	D	I	.	.	.	.	.	.	.	.	.	.	.	S	F	G	S
Query Conservation																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	P	K	I	L	F	G	L	T	L	L	L	V	I	T	A	V	I	S	L	G	I	G	R	Y	S	L	S	V	P	Q	I	D	P	V	Q	Q	Q	V	I	F	Q	V	R	L	P	R	I	L	T	A	L	C	V	G	A	G	L	A	L	S	G	V	V	L	Q	G	I	F	R	N	P	L	V	N	P	H	I	I	G
Template Known Secondary structure																					T	T	S	S	T	T			S	S														T																										T	T		T	T			T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	G	L	C	A	I	A	L	G	V	L	F	Q	S	G	V	P	M	P	L	A	I	L	L	T	L	L	L	G	A	L	C	G	L	I	N	A	G	L	I	I	Y	T	K	V	N	P	L	V	I	T	L	G	T	L	Y	L	F	A	G	S	A	L	L	L	S	G	M	A	G	A	T	G	Y	E	G	I	G	G
Query Conservation
Alig confidence																																																																					.	.
Template Conservation																																																																					.	.
Template Sequence		V	T	S	G	S	A	F	G	G	T	L	A	I	F	F	G	F	S	L	Y	G	L	F	T	S	T	I	L	F	G	F	G	T	L	A	L	V	F	L	F	S	F	K	S	L	L	M	L	I	L	I	G	M	I	L	S	G	L	F	S	A	L	V	S	L	L	Q	.	.	Y	I	S	D	T	E	E	K	L	P	S
Template Known Secondary structure																T	T																										T																										.	.		S	S		T	T	T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	M	A	F	T	D	F	A	N	L	D	V	L	G	L	P	V	P	L	I	I	F	L	I	C	L	L	V	F	W	L	W	L	H	K	T	H	A	G	R	N	V	F	L	I	G	Q	S	P	R	V	A	L	Y	S	A	I	P	V	N	R	T	L	C	A	L	Y	A	M	T	G	L	A	S	A	V	A	A	V
Query Conservation
Alig confidence																																						.	.	.	.	.
Template Conservation																																						.	.	.	.	.
Template Sequence		I	V	F	W	L	M	G	S	F	A	T	S	N	W	E	K	L	L	F	F	F	V	P	F	L	L	C	S	S	I	L	L	S	L	S	W	.	.	.	.	.	R	L	N	L	L	S	L	D	E	K	E	A	K	A	L	G	V	K	M	A	P	L	R	W	L	V	I	F	L	S	G	S	L	V	A	C	Q	V	A
Template Known Secondary structure						T	T			S	T	T																							T	T	T	.	.	.	.	.	G	G	G	G	G	G	S								T	T
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		228	.	230			.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure					.	.																																																								.	.	.
Query SS confidence					.	.																																																								.	.	.
Query Sequence		L	L	V	.	.	S	Y	F	G	S	A	R	S	D	L	G	A	S	F	L	M	P	A	I	T	A	V	V	L	G	G	A	N	I	Y	G	G	S	G	S	I	I	G	T	A	I	A	V	L	L	V	G	Y	L	Q	Q	G	L	Q	M	.	.	.	A	G	V	P	N	Q	V	S	S	A	L	S	G	A	L	L	I
Query Conservation					.	.																																																								.	.	.
Alig confidence					.	.																									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	G	S	I	G	W	V	G	L	I	I	P	H	L	S	R	M	L	V	G	A	N	H	Q	S	L	L	P	.	.	.	.	.	.	.	.	.	.	.	.	C	T	M	L	V	G	A	T	Y	M	L	L	V	D	N	V	A	R	S	L	S	D	A	E	I	P	I	S	I	L	T	A	L	I	G	A	P	L	F
Template Known Secondary structure								S	S	T	T												S								.	.	.	.	.	.	.	.	.	.	.	.																				S		S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.													.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		303	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	V	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	L	V	Y	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions