Job Description P0AFS1 Confidence 65.31% Date Thu Jan 5 11:27:07 GMT 2012 Rank 3 Aligned Residues 191 % Identity 12% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		A	A	L	L	V	I	E	I	V	A	F	G	A	I	N	P	R	M	L	D	L	N	M	L	L	F	S	T	S	D	F	I	C	I	G	I	V	A	L	P	L	T	M	V	I	V	.	S	G	G	I	D	I	S	F	G	S	T	I	G	L	C	A	I	A	L	G	V	L	F	Q	S	G	V	P	M	P	L	A	I
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		A	A	L	L	W	F	G	W	F	G	F	N	G	G	S	A	L	A	A	N	D	V	A	I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	D	V	K	G	A	I
Template Known Secondary structure															G	G	G	S	S	S	S																													S																			T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	L	L	L	G	A	L	C	G	L	I	N	A	G	L	I	I	Y	T	K	V	N	P	L	V	I	T	L	G	T	L	Y	L	F	A	G	S	A	L	L	L	S	G	M	A	G	A	T	G	Y	E	G	I	G	G	F	P	M	A	F	T	D	F	A	N	L	D	V	L	G	L	P	V	P	L	I	I	F
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		V	I	G	L	V	A	G	I	V	C	Y	L	A	M	D	F	.	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A
Template Known Secondary structure																		.				T	T				T	T																											S				G	G	G	T
Template Predicted Secondary structure																		.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	C	L	L	V	F	W	L	W	L	H	K	T	H	A	G	R	N	V	F	L	I	G	Q	S	P	R	V	A	L	Y	S	A	I	P	V	N	R	T
Query Conservation
Alig confidence																	.	.	.												.	.	.	.
Template Conservation																	.	.	.												.	.	.	.
Template Sequence		F	L	V	T	L	I	L	A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V	.	.	.	.	G	L	D	L	S	Q	H
Template Known Secondary structure																T	.	.	.		S	B									.	.	.	.
Template Predicted Secondary structure																	.	.	.												.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.					.	380	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions