Phyre 2 alignment of Q46888 with c3g79A

Job Description Q46888
Confidence 99.97% Date Thu Jan 5 12:35:30 GMT 2012

Rank 29 Aligned Residues 267

% Identity 19% Template c3g79A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40					.	.	.	.	.																						.	.	.	.	50	.	.	.	.	.
Predicted Secondary structure																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	G	S	E	F	H	V	G	I	V	G	L	G	S	M	G	M	G	A	A	L	S	Y	V	R	A	G	.	.	L	S	T	W	G	A	D	L	N	S	N	.	.	.	.	A	C	A	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	A	G	A	C	G	V	S	D
Query Conservation																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.												.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	G	P	I	K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P
Template Known Secondary structure			S										S	T	T											S	T	T												T	T	T	T	T						T	T	T				S	S			G	G	G											T	T						S
Template Predicted Secondary structure
Template SS confidence
	15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.

	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.
Predicted Secondary structure																				.	.	.	.	.	.	.	.																																																		.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.																																																		.	.	.
Query Sequence	N	A	A	T	F	A	E	K	L	D	A	L	L	V	L	V	V	N	A	.	.	.	.	.	.	.	.	A	Q	V	K	Q	V	L	F	G	E	T	G	V	A	Q	H	L	K	P	G	T	A	V	M	V	S	S	T	I	A	S	A	D	A	Q	E	I	A	T	A	L	A	G	F	D	L	E	M	L	.	.	.	D
Query Conservation																				.	.	.	.	.	.	.	.																																																		.	.	.
Alig confidence					.															.	.	.	.	.	.	.	.																																																		.	.	.
Template Conservation					.
Template Sequence	D	F	S	R	.	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D
Template Known Secondary structure		G	G	G	.	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T
Template Predicted Secondary structure					.
Template SS confidence
	95	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.

	125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.
Query Sequence	A	P	V	S	G	G	A	V	K	A	A	N	G	E	M	T	.	.	.	.	.	.	.	.	V	M	A	S	G	S	D	I	A	F	E	R	L	A	P	V	L	E	A	V	A	G	K	V	Y	R	I	G	A	E	P	G	L	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	G	A	E	A	M
Query Conservation																	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	A	L	A	H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	I	N	Q	L	A
Template Known Secondary structure	B											T	T	S								S							S	S												G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
	174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.
Query Sequence	A	L	A	A	R	A	G	I	P	L	D	V	M	Y	D	V	V	T	N	A	A	G	N	S	W	M	F	E	N	R	M	R	H	V	V	D	G	D	Y	T	P	H	S	A	V	D	I	F	V	K	D	L	G	L	V	A	D	T	A	K	A	L	H	F	P	L	.	.	.	.	.	.	.	P	L	A	S	T	A	L
Query Conservation																																																																			.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.
Template Sequence	L	Y	C	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D	S	L	K	G	E	G	I	T	R	A	V	L	W	P	G	.	.	.	.	.	.	.	A	G	V	G	G	H	C	L	T	K	D	T	Y	H	L	E	R	G	V	K	I	G	R	G	E	L	D	Y	P	E	G	A	D	S	I	Y	V	L	A	R
Template Known Secondary structure						T	T												T	S			S	S	S									.	.	.	.	.	.	.	S				S	S														T	T	S	S							S	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.								.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	M	F	T	S	A	S	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	V	N	D	F	M	P	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	327	.	.	330	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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