Job Description Q46888 Confidence 99.86% Date Thu Jan 5 12:35:30 GMT 2012 Rank 67 Aligned Residues 261 % Identity 14% Template c3dzbA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from streptococcus2 thermophilus Resolution 2.46 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																									.	.																						.
Query SS confidence																									.	.																						.
Query Sequence		H	V	G	I	V	G	L	G	S	M	G	M	G	A	A	L	S	Y	V	R	A	G	L	.	.	S	T	W	G	A	D	L	N	S	N	A	C	A	T	L	K	E	A	G	A	C	.	G	V	S	D	N	A	A	T	F	A	E	K	L	D	A	L	L	V	L	V	V	N	A	A	Q	V	K	Q	V	L	F	G	E
Query Conservation																									.	.																						.
Alig confidence																									.	.																						.																												.	.	.
Template Conservation																																																																												.	.	.
Template Sequence		T	I	Y	I	A	G	L	G	L	I	G	G	S	L	A	L	G	I	K	R	D	H	P	D	Y	E	I	L	G	Y	N	R	S	D	Y	S	R	N	I	A	L	E	R	G	I	V	D	R	A	T	G	D	F	K	E	F	A	P	L	A	D	V	I	I	L	A	V	P	I	K	Q	T	X	A	.	.	.	Y	L	K
Template Known Secondary structure						S			S												T	T		T	T	S							S											T		S		S				S						G	G	G		S						S								.	.	.
Template Predicted Secondary structure																																																																												.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.									.	.	.
Query SS confidence																																																					.	.	.									.	.	.
Query Sequence		T	G	V	A	Q	H	L	K	P	G	T	A	V	M	V	S	S	T	I	A	S	A	D	A	Q	E	I	A	T	A	L	A	G	F	D	L	E	M	L	D	A	P	V	S	G	G	A	V	K	A	A	.	.	.	N	G	E	M	T	V	M	A	.	.	.	S	G	S	D	I	A	F	E	R	L	A	P	V	L	E
Query Conservation																																																					.	.	.									.	.	.
Alig confidence																																																					.	.	.									.	.	.
Template Conservation
Template Sequence		E	L	A	D	L	D	L	K	D	N	V	I	I	T	D	A	G	S	T	K	R	E	I	V	E	A	A	E	R	Y	L	T	G	K	N	V	Q	F	V	G	S	H	P	X	A	G	S	A	A	D	V	T	L	F	E	N	A	Y	Y	I	F	T	P	T	S	L	T	K	E	T	T	I	P	E	L	K	D	I	L	S
Template Known Secondary structure				T	T	S				T	T								S														T	T	S	S										B						T	T	T	T	T	T	S								T	T			T	T									G	G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		A	V	A	G	K	V	Y	R	I	G	A	E	P	G	L	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	G	A	E	A	M	A	L	A	A	R	A	G	I	P	L	D	V	M	Y	D	V	V	T	N	A	A	G	N	S	W	M	F	E	N	R	M	R	H	V	V	D	G	D	Y	T	.	P
Query Conservation																																																																																.
Alig confidence																		.																																																														.
Template Conservation																		.
Template Sequence		G	L	K	S	R	Y	V	E	I	D	A	A	E	H	D	R	.	V	T	S	Q	I	S	H	F	P	H	L	L	A	S	G	L	X	E	Q	A	A	D	Y	A	Q	A	H	E	X	T	N	H	F	A	A	G	G	F	R	D	X	T	R	I	A	E	S	E	P	G	X	W	A	S	I	L	X	T	N	G	P	A	V
Template Known Secondary structure		G	G															.						T																						T															G	G	G	G	S												T
Template Predicted Secondary structure																		.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	A	V	D	I	F	V	K	D	L	G	L	V	A	D	T	A	K	A	L	H	F	P	L	P	L	A	S	T	A	L	N	M	F	T	S	A	S	N
Query Conservation
Alig confidence																									.	.	.	.	.
Template Conservation																									.	.	.	.	.
Template Sequence		L	D	R	I	E	D	F	K	K	R	L	D	H	V	A	D	L	I	K	A	E	D	E	.	.	.	.	.	S	A	I	W	E	F	F	D	N	G	R	K
Template Known Secondary structure																					T	T			.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions