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Job DescriptionQ46888
Confidence99.65%DateThu Jan 5 12:35:30 GMT 2012
Rank98Aligned Residues270
% Identity11%Templatec3c7cB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:octopine dehydrogenase; PDBTitle: a structural basis for substrate and stereo selectivity in2 octopine dehydrogenase (odh-nadh-l-arginine)
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20........ .30.........40........ .50.........60..
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Query Sequence  EFHVGIVGLGSMGMGAALSYVRA. GLSTWGADLNSNACATLKEA. . . . . . . . . . . . . . . . . . . . . . GACGVSDNAATFAE
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Template Sequence  TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS
Template Known Secondary structure 


STTSTT

STTTTS

TTS


SS
T
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   63......70.........80.........90.........100.........110.........120.........130........
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Query Sequence  KLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGE. . . .
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Template Sequence  GADVVILTVP. . . . AFAHEGYFQAMAPYVQDSALIVGL. PSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRK
Template Known Secondary structure  T
S
S
....GGGTTT

TT
T.T

SSGGGGGTSSS
STTT
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   82.......90. ........100.........110..... ....120.........130.........140.........150......
 
   139140.........150.........160.........170.........180..
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Query Sequence  . . . . . . . . . . . MTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQ. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMSYSFVHPAILFGRWGSWDGKPVPEAPLFYQ
Template Known Secondary structure 
S

SS

S

SSS
S
TT
TTTT

S

BSS

BSGG
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   183......190.........200..... ....210.........220.........230..
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Query Sequence  . . . . LLAGVHIAAGAEAMALAARAGIP. . . . . . . . . . . . LDVMYDVVTNAAGNSWMFENRMRHVVD. . . . . . . . . . . . . .
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Template Sequence  GIDQATADMLTACSNECKDVANAIMAACPGNDLSDVKDIYQWYLEYYHEDIQDDHDLYHAITTNKSYKGLVHPVKAVDGG
Template Known Secondary structure  G

STT


TT


STTTBS

SSTBGGGTT
B

TT
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   233......240.........250.........260.........270.........280
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Query Sequence  . . GDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSASNAGY
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Template Sequence  VAPDFGNRYLTEDIPMGMIVFKGVAIAAGVAIPSNDKLIMWAQEKIGKEY
Template Known Secondary structure 


STTTTTTTTTTT


TT


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   317..320.........330.........340.........350.........360......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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