Job Description Q46888 Confidence 99.74% Date Thu Jan 5 12:35:30 GMT 2012 Rank 85 Aligned Residues 238 % Identity 14% Template c2qytA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from porphyromonas2 gingivalis w83 Resolution 2.15 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.														.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	H	V	G	I	V	G	L	G	S	M	G	M	G	A	A	L	S	Y	V	R	A	G	.	.	.	.	.	.	L	S	T	W	G	A	D	L	N	S	N	A	C	A	T	L	K	E	A	G	A	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	D	N	A	A	T	F	A	E	K	L	D	A
Query Conservation																										.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		P	I	K	I	A	V	F	G	L	G	G	V	G	G	Y	Y	G	A	X	L	A	L	R	A	A	A	T	D	G	L	L	E	V	S	W	I	A	R	.	G	A	H	L	E	A	I	R	A	A	G	G	L	R	V	V	T	P	S	R	D	F	L	A	R	P	T	C	V	T	D	N	P	A	E	V	G	T	V	D	Y
Template Known Secondary structure											S																	T	T	S	S									.											T	S						S	S								S				S
Template Predicted Secondary structure																																								.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																					.	.	.
Query SS confidence																																																					.	.	.
Query Sequence		L	L	V	L	V	V	N	A	A	Q	V	K	Q	V	L	F	G	E	T	G	V	A	Q	H	L	K	P	G	T	A	V	M	V	S	S	T	I	A	S	A	D	A	Q	E	I	A	T	A	L	A	G	.	.	.	F	D	L	E	M	L	D	A	P	V	S	G	G	A	V	K	A	A	N	G	E	M	T	V	M	A
Query Conservation																																																					.	.	.
Alig confidence									.	.	.	.																																									.	.	.
Template Conservation									.	.	.	.
Template Sequence		I	L	F	C	T	K	D	.	.	.	.	Y	D	X	E	R	G	V	A	E	I	R	P	X	I	G	Q	N	T	K	I	L	P	L	L	N	G	A	D	I	A	E	R	X	R	T	Y	L	P	D	T	V	V	W	K	G	C	V	Y	I	S	A	R	K	S	A	P	G	L	I	T	L	E	A	D	R	E	L	F	Y
Template Known Secondary structure							S	S	.	.	.	.	S										G	G	G											S		S	S	S						T	T	T	S		T	T	T	B														T	T
Template Predicted Secondary structure									.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
							144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.																				.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	S	G	S	D	I	A	F	E	R	L	A	P	V	L	E	A	V	A	G	K	V	Y	R	I	G	A	E	P	G	L	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	E	A	M	A	L	A
Query Conservation		.	.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																						.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		F	G	S	G	L	P	E	Q	T	D	D	E	V	R	L	A	E	L	L	T	A	A	G	I	R	A	.	Y	N	P	T	D	I	D	W	Y	I	X	K	K	F	X	X	I	S	V	T	A	T	A	T	A	Y	F	D	K	P	I	G	S	I	L	T	E	H	E	P	E	L	L	S	L	L	E	E	V	A	E	L	F
Template Known Secondary structure						S	S	S															T	T				.				S																								T	S
Template Predicted Secondary structure																												.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	G	I	P	L	D	V	M	Y	D	V	V	T	N	A	A	G	N	S	W	M	F	E	N	R	M	R	H	V	V	D	G	D	Y	T	P	H	S	A	V	D	I	F	V	K	D	L	G	L	V	A	D	T	A	K	A	L	H	F	P	L	P	L	A	S	T	A	L	N	M	F
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	K	Y	G	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	P	D	D	V	V	Q	Q	L	L	D	K	Q	R	K	X	E	T	L	T	.	.	.	.	.	.	.	.	.	.	.	G	Y	V	V	R	E	A	E	A	L	R	V	D	L	P	X	Y	K	R	X	Y	R	E	L
Template Known Secondary structure					T	S			.	.	.	.	.	.	.	.	.	.	.	.		S	S														T	T	T	.	.	.	.	.	.	.	.	.	.	.										T	T												T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.													.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.												.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions