Job Description Q46888 Confidence 99.87% Date Thu Jan 5 12:35:30 GMT 2012 Rank 60 Aligned Residues 283 % Identity 15% Template c1wpqB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad+], PDBTitle: ternary complex of glycerol 3-phosphate dehydrogenase 12 with nad and dihydroxyactone Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.													.	40	.	.	.	.	.	.	.	.	.														50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	E	F	H	V	G	I	V	G	L	G	S	M	G	M	G	A	A	L	S	Y	V	R	A	G	L	S	T	W	G	A	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	S	N	A	C	A	T	L	K	E	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	G	V	S	D	N	A	A	T
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	K	K	V	C	I	V	G	S	G	N	W	G	S	A	I	A	K	I	V	G	G	N	A	A	Q	L	A	Q	F	D	P	R	V	T	M	W	V	F	E	E	D	I	G	G	K	K	L	T	E	I	I	N	T	Q	H	E	N	V	K	Y	L	P	G	H	K	L	P	P	N	V	V	A	V	P	D	V	V	Q
Template Known Secondary structure												S																		S	S															T	T														T	T	T	S	T	T					T	T					S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.
Query Sequence		F	A	E	K	L	D	A	L	L	V	L	V	V	N	A	A	Q	V	K	Q	V	L	F	G	E	T	G	V	A	Q	H	L	K	P	G	T	A	V	M	.	.	.	.	.	.	V	S	S	T	I	A	S	A	D	A	Q	E	I	A	T	A	L	A	G	F	D	L	E	M	L	D	A	P	V	S	G	G	A	V	K
Query Conservation																																									.	.	.	.	.	.
Alig confidence															.	.	.	.																							.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		A	A	E	D	A	D	I	L	I	F	V	V	P	.	.	.	.	H	Q	F	I	G	K	I	C	D	Q	L	K	G	H	L	K	A	N	P	T	G	I	S	L	I	K	G	V	D	E	G	P	N	G	L	K	L	I	S	E	V	I	G	E	R	L	G	I	P	M	S	V	L	M	G	A	N	I	A	S	E	V	A
Template Known Secondary structure				T	T		S						S		.	.	.	.												T	T		S		S	S														T	T													T	T								S	S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	N	G	E	M	T	V	M	A	S	G	S	D	I	A	F	E	R	L	A	P	V	L	E	A	V	A	G	K	V	Y	R	I	G	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	L	G	S	T	V	K	I	I	H	Q	L	L	A	G	V	H	I	A	A	G	A	E	A	M	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	E	K	F	C	E	T	T	I	G	C	K	D	P	A	Q	G	Q	L	L	K	E	L	M	Q	T	P	N	F	R	I	T	V	V	Q	E	V	D	T	V	E	I	C	G	A	L	K	N	V	V	A	V	G	A	G	F	C	D	G	L	G	F	G	D	N	T	K	A	A	V	I	R	L	G	L	M	E	M	I	A
Template Known Secondary structure		T	T										S														B	T	T							S																									T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		198	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.													.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure									.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence									.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		L	A	A	R	A	G	I	.	.	.	P	L	D	V	M	Y	D	V	V	T	N	A	A	G	N	S	W	M	F	E	N	R	M	R	H	V	V	D	G	D	Y	T	P	H	S	A	V	D	I	F	V	K	D	L	.	.	.	.	.	.	.	.	.	.	.	.	G	L	V	A	D	T	A	K	A	L	H	F	.	.
Query Conservation									.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence									.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		F	A	K	L	F	C	S	G	P	V	S	S	A	T	F	L	E	S	C	G	V	A	D	L	I	T	T	C	Y	G	G	R	N	R	K	V	A	E	A	F	A	R	T	G	K	S	I	E	Q	L	E	K	E	L	L	N	G	Q	K	L	Q	G	P	E	T	A	R	E	L	Y	S	I	L	Q	H	K	G	L	V	D
Template Known Secondary structure							S	S	S				G	G	G	G	G	S	T	T	T																																			S	T	T																		T	T	T		G	G
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	P	L	A	S	T	A	L	N	M	F	T	S	A	S	N	A	G	Y	G	K	E	D	D	S	A	V	I	K	I	F	S	G	I	T	L	P	G	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.																.	.
Template Conservation														.	.	.	.	.	.	.																.	.
Template Sequence		K	F	P	L	F	M	A	V	Y	K	V	C	.	.	.	.	.	.	.	Y	E	G	Q	P	V	G	E	F	I	H	C	L	Q	N	.	.	H	P	E	H
Template Known Secondary structure		G												.	.	.	.	.	.	.		T				G	G	G							T	.	.			S
Template Predicted Secondary structure														.	.	.	.	.	.	.																.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.								330	.	.	.	.	.	.	.	.	.	340	.	.	.	.			.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions