Job Description P76518 Confidence 100.00% Date Thu Jan 5 12:23:58 GMT 2012 Rank 1 Aligned Residues 372 % Identity 32% Template d2vjma1 SCOP info CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) Resolution 1.89

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		K	G	P	F	E	G	L	L	V	I	D	M	T	H	V	L	N	G	P	F	G	T	Q	L	L	C	N	M	G	A	R	V	I	K	V	E	P	P	G	H	G	D	D	T	R	T	F	G	P	Y	V	D	G	.	Q	S	L	Y	Y	S	F	I	N	H	G	K	E	S	V	V	L	D	L	K	N	D	H	D	K	S
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		T	K	P	L	D	G	I	N	V	L	D	F	T	H	V	Q	A	G	P	A	C	T	Q	M	M	G	F	L	G	A	N	V	I	K	I	E	R	R	G	S	G	D	M	T	R	G	W	L	Q	D	K	P	N	V	D	S	L	Y	F	T	M	F	N	C	N	K	R	S	I	E	L	D	M	K	T	P	E	G	K	E
Template Known Secondary structure				T	T	T	T									T	T												T	T									T	T	T		S	G	G	G	G	S	S		S	S	T	T	S							T	T		S	S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	I	N	M	L	K	Q	A	D	V	L	A	E	N	F	R	P	G	T	M	E	K	L	G	F	S	W	E	T	L	Q	E	I	N	P	R	L	I	Y	A	S	S	S	G	F	G	H	T	G	P	L	K	D	A	P	A	Y	D	T	I	I	Q	A	M	S	G	I	M	M	E	T	G	Y	P	D	A	P	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	E	Q	M	I	K	K	A	D	V	M	V	E	N	F	G	P	G	A	L	D	R	M	G	F	T	W	E	Y	I	Q	E	L	N	P	R	V	I	L	A	S	V	K	G	Y	A	E	G	H	A	N	E	H	L	K	V	Y	E	N	V	A	Q	C	S	G	G	A	A	A	T	T	G	F	W	D	G	P	P	T
Template Known Secondary structure											S							S	T	T					T	T											T	T								S	S		T	T	S	T	T	T	T												T	T	T	T	T	T	S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	G	T	S	L	A	D	L	C	G	G	V	Y	L	F	S	G	I	V	S	A	L	Y	G	R	E	K	S	Q	R	G	A	H	V	D	I	A	M	F	D	A	T	L	S	F	L	E	H	G	L	M	A	Y	I	A	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	G	A	A	L	G	D	S	N	S	G	M	H	L	M	I	G	I	L	A	A	L	E	I	R	H	K	T	G	R	G	Q	K	V	A	V	A	M	Q	D	A	V	L	N	L	V	R	I	K	L	R	D	Q	Q	R	L	E	R	T	G	I	L	A	E	Y	P	Q	A	Q	P	N	F	A	F	D	R	D	G	N
Template Known Secondary structure				S	S		T	T	T																						S																	T														S			T	T	S	G	G	G	S	T	T			B		T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
									224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.	.	.	.																						.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																						.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	K	S	P	Q	R	L	G	N	R	H	P	Y	M	A	P	F	D	V	F	N	T	.	.	.	.	.	Q	D	K	P	I	T	I	C	C	G	N	D	K	L	F	S	A	L	C	Q	A	L	E	L	T	E	L	V	N	D	P	R	F	S	S	N	I	L	R	V	Q	N	Q	A	I	L	K
Query Conservation		.	.	.	.	.	.	.																						.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence		P	L	S	F	D	N	I	T	S	V	P	R	G	G	N	A	G	G	G	G	Q	P	G	W	M	L	K	C	K	G	W	E	T	D	A	D	S	Y	V	Y	F	T	I	A	A	N	M	W	P	Q	I	C	D	M	I	D	K	P	E	W	K	D	D	P	A	Y	N	T	F	E	G	R	V	D	K	L	M	D	I	F
Template Known Secondary structure		B			G	G	G			S					T	T			T	T	S	S	S							T	T	T	T	T		T	T									G	G	G								T	T		G	G	G	S	S		T	T	T	S	S					T	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.						.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.
Query Sequence		Q	Y	I	E	R	T	L	K	T	Q	A	A	E	V	W	L	A	R	I	H	E	V	G	V	P	V	A	P	L	L	S	V	A	E	A	I	K	L	P	Q	T	Q	A	R	N	M	L	I	E	A	.	.	.	.	.	G	G	I	M	M	P	G	N	P	I	K	I	S	G	C	A	D	P	H	V	M	P	G	A	A
Query Conservation																																																				.	.	.	.	.
Alig confidence																																																				.	.	.	.	.																	.						.
Template Conservation																																																																									.						.
Template Sequence		S	F	I	E	T	K	F	A	D	K	D	K	F	E	V	T	E	W	A	A	Q	Y	G	I	P	C	G	P	V	M	S	M	K	E	L	A	H	D	P	S	L	Q	K	V	G	T	V	V	E	V	V	D	E	I	R	G	N	H	L	T	V	G	A	P	F	K	F	S	G	F	Q	.	P	E	I	T	R	.	A	P
Template Known Secondary structure							T	T	T	T	S												T	T														T							T	T	S							T	T	T									S	S			S	S			.						.
Template Predicted Secondary structure																																																																									.						.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.		.	.	.	.	.		.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	D	Q	H	G	E	Q	I	R	Q	E	F	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	G	E	H	T	D	E	V	L	K	E	L	G
Template Known Secondary structure			T	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions