Job Description P76518 Confidence 100.00% Date Thu Jan 5 12:23:58 GMT 2012 Rank 4 Aligned Residues 370 % Identity 23% Template c1xa3B_ PDB info PDB header:transferase Chain: B: PDB Molecule:crotonobetainyl-coa:carnitine coa-transferase; PDBTitle: crystal structure of caib, a type iii coa transferase in2 carnitine metabolism Resolution 1.85 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	N	N	E	S	K	G	P	F	E	G	L	L	V	I	D	M	T	H	V	L	N	G	P	F	G	T	Q	L	L	C	N	M	G	A	R	V	I	K	V	E	P	P	G	H	G	D	D	T	R	T	F	G	P	Y	V	D	G	Q	S	L	Y	Y	S	F	I	N	H	G	K	E	S	V	V	L	D	L	K	N
Query Conservation
Alig confidence						.																																																	.	.	.	.	.	.	.
Template Conservation						.																																																	.	.	.	.	.	.	.
Template Sequence		L	P	X	P	.	K	F	G	P	L	A	G	L	R	V	V	F	S	G	I	E	I	A	G	P	F	A	G	Q	X	F	A	E	W	G	A	E	V	I	W	I	E	N	V	A	W	A	D	T	I	R	V	Q	.	.	.	.	.	.	.	P	N	Y	P	Q	L	S	R	R	N	L	H	A	L	S	L	N	I	F	K
Template Known Secondary structure						.			S	T	T	T	T									S	S												T	T									S	S	S			G	G	G	G	S	.	.	.	.	.	.	.	S	S						T	T	T								T	T	S
Template Predicted Secondary structure						.																																																	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.		.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.								.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		D	H	D	K	S	I	F	I	N	M	L	K	Q	A	D	V	L	A	E	N	F	R	P	G	T	M	E	K	L	G	F	S	W	E	T	L	Q	E	I	N	P	R	L	I	Y	A	S	S	S	G	F	G	H	T	G	P	.	.	L	K	D	A	P	A	Y	D	T	I	I	Q	A	M	S	G	I	M	M	E	T	G
Query Conservation																																																										.	.
Alig confidence																																																										.	.
Template Conservation
Template Sequence		D	E	G	R	E	A	F	L	K	L	X	E	T	T	D	I	F	I	E	A	S	K	G	P	A	F	A	R	R	G	I	T	D	E	V	L	W	Q	H	N	P	K	L	V	I	A	H	L	S	G	F	G	Q	Y	G	T	E	E	Y	T	N	L	P	A	Y	N	T	I	A	Q	A	F	S	G	Y	L	I	Q	N	G
Template Known Secondary structure													T	T		S							S	S	S					T	T											T	T								S	S		S	S	S		T	T	T	T	T	S											T	T	S	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.
Query SS confidence																																																																								.
Query Sequence		Y	P	D	A	P	P	V	R	V	G	T	S	L	A	D	L	C	G	G	V	Y	L	F	S	G	I	V	S	A	L	Y	G	R	E	K	S	Q	R	G	A	H	V	D	I	A	M	F	D	A	T	L	S	F	L	E	H	G	L	M	A	Y	I	A	T	G	K	S	P	Q	R	.	L	G	N	R	H	P	Y	M	A
Query Conservation																																																																								.
Alig confidence						.																																																																		.
Template Conservation						.
Template Sequence		D	V	D	Q	.	P	X	P	A	F	P	Y	T	A	D	Y	F	S	G	L	T	A	T	T	A	A	L	A	A	L	H	K	V	R	E	T	G	K	G	E	S	I	D	I	A	X	Y	E	V	X	L	R	X	G	Q	Y	F	X	X	D	Y	F	N	G	G	E	X	C	P	R	X	S	K	G	K	D	P	Y	Y	A
Template Known Secondary structure			T	T		.					T	T	T																																										T									T	T	S						B	B	T	T	B		S	S	B	T
Template Predicted Secondary structure						.
Template SS confidence
		156	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		P	F	D	V	F	N	T	Q	D	K	P	I	T	I	C	C	G	N	D	K	L	F	S	A	L	C	Q	A	L	E	L	T	E	L	V	N	D	P	R	F	S	S	N	I	L	.	.	.	.	.	R	V	Q	N	Q	A	I	L	K	Q	Y	I	E	R	T	L	K	T	Q	A	A	E	V	W	L	A	R	I	H	E
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.
Template Conservation
Template Sequence		G	C	G	L	Y	K	C	A	D	G	Y	I	V	X	E	L	V	G	I	T	Q	I	E	E	C	F	K	D	I	G	L	A	H	L	L	G	T	P	E	I	P	E	G	T	Q	L	I	H	R	I	E	C	P	Y	G	P	L	V	E	E	K	L	D	A	W	L	A	T	H	T	I	A	E	V	K	E	R	F	A	E
Template Known Secondary structure		T							T	T									S												T		G	G	G	T	T	B	T	T	B		T	T			S		B	T	T	T	S	T	T														T	S
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.						.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		V	G	V	P	V	A	P	L	L	S	V	A	E	A	I	K	L	P	Q	T	Q	A	R	N	M	L	I	E	A	.	.	.	.	.	G	G	I	M	M	P	G	N	P	I	K	I	S	G	C	A	D	P	H	V	M	P	G	A	A	T	L	D	Q	H	G	E	Q	I	R	Q	E	F	S
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.																	.
Template Conservation																																																				.
Template Sequence		L	N	I	A	C	A	K	V	L	T	V	P	E	L	E	S	N	P	Q	Y	V	A	R	E	S	I	T	Q	W	Q	T	X	D	G	R	T	C	K	G	P	N	I	X	P	K	F	K	N	N	P	.	G	Q	I	W	R	G	X	P	S	H	G	X	D	T	A	A	I	L	K	N	I	G
Template Known Secondary structure			T									G	G	G	S	T	T								T								T	T	S									S	S			S	S	S		.										T	T	T	T								T	T
Template Predicted Secondary structure																																																				.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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