Return to main results Retrieve Phyre Job Id

Job DescriptionP76518
Confidence93.93%DateThu Jan 5 12:23:58 GMT 2012
Rank13Aligned Residues103
% Identity14%Templatec1pjcA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50.........60.........70.........80.........
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  FEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFIN
Query Conservation 
 





     


 
  



 







 
  

  
            
   






 


    
   
  
Alig confidence 



































...............






















...


Template Conservation 
    
 


 
 

  

     

  
   
   ...............                       ...
  
Template Sequence  VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV. . . . . . . . . . . . . . . ERLSYLETLFGSRVELLYSNSAE. . . IET
Template Known Secondary structure  B




STT
S
...............GGGS

...
Template Predicted Secondary structure 












...............








...
Template SS confidence 















































































   165....170.........180.........190.........200 .........210.........220... ...
 
   90......... 100.........110.........120.........130
Predicted Secondary structure 

.










Query SS confidence 









.






























Query Sequence  MLKQADVLAE. NFRPGTMEKLGFSWETLQEINPRLIYASSSG
Query Conservation 

  


 
 .
  

    


    
   

 

   


Alig confidence 









.






























Template Conservation       



          
 

    
  

 
 





 
Template Sequence  AVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV
Template Known Secondary structure  T
S



TTSS



B
TTS
TT
TT
Template Predicted Secondary structure 





















Template SS confidence 









































   227..230.........240.........250.........260........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions