Job Description P0AC02 Confidence 96.04% Date Thu Jan 5 11:16:49 GMT 2012 Rank 107 Aligned Residues 185 % Identity 7% Template c3txmA_ PDB info PDB header:hydrolase, protein binding Chain: A: PDB Molecule:26s proteasome regulatory complex subunit p42b; PDBTitle: crystal structure of rpn6 from drosophila melanogaster, gd(3+) complex Resolution 3.00 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																	.	.	.																																												.	.	.
Query SS confidence																																	.	.	.																																												.	.	.
Query Sequence		P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	.	.	.	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P	T	H	P	N	I	.	.	.
Query Conservation																																	.	.	.																																												.	.	.
Alig confidence																																	.	.	.																																												.	.	.
Template Conservation
Template Sequence		E	Q	G	I	L	Q	Q	G	E	L	Y	K	Q	E	G	K	A	K	E	L	A	D	L	I	K	V	T	R	P	F	L	S	S	I	S	K	A	K	A	A	K	L	V	R	S	L	V	D	M	F	L	D	M	D	A	G	T	G	I	E	V	Q	L	C	K	D	C	I	E	W	A	K	Q	E	K	R	T	F	L	R
Template Known Secondary structure															T	T																	T	T	S																		T	S																				T	T	T
Template Predicted Secondary structure
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	V	M	Y	M	R	G	L	T	N	M	A	L	D	D	S	A	L	Q	G	F	F	G	V	D	R	S	D	R	D	P	Q	H	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y	Y
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	L	E	A	R	L	I	A	L	Y	F	D	T	A	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	A	L	A	L	G	A	Q	L	L	R	E	L	K	K	L	D	D	K	N	L	L	V	E	V	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	E	S	K	T	Y
Template Known Secondary structure																T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	S	S		T							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.																			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.												170	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																					.
Query SS confidence																					.	.	.	.																					.
Query Sequence		T	E	R	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D	.	.	.	.	Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	.	M	Q	M	N	A	Q	A	E	K	V	A	K	I	I	A	A	N	S	S	N	T
Query Conservation																					.	.	.	.																					.
Alig confidence																					.	.	.	.																					.
Template Conservation
Template Sequence		H	A	L	S	N	L	P	K	A	R	A	A	L	T	S	A	R	T	T	A	N	A	I	Y	C	P	P	K	V	Q	G	A	L	D	L	Q	S	G	I	L	H	A	A	D	E	R	D	F	K	T	A	F	S	Y	F	Y	E	A	F	E	G	F	D	S	V
Template Known Secondary structure				T	T																			S																					T	T																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions