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Job DescriptionP0AC02
Confidence99.94%DateThu Jan 5 11:16:49 GMT 2012
Rank2Aligned Residues208
% Identity25%Templatec3qkyA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:outer membrane assembly lipoprotein yfio; PDBTitle: crystal structure of rhodothermus marinus bamd
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.........70.........80.........90.........100.......
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Query Sequence  PDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY
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Template Sequence  RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ
Template Known Secondary structure 

SSTT
GGG
S
STTTT

TT
TT
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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   108.110.........120.........130.........140.........150.........160.........170.........180.......
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Query Sequence  VMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE
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Template Sequence  AEYERAMCYYKLSPP. . . . . . . . . . YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER
Template Known Secondary structure 


..........TTS


TT
TT
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   110.........120.... .....130.........140.........150.........160.........170.........
 
   188.190.........200.........210.........220..... ....230.........240.....
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Query Sequence  RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQM. . . . . . . . . . QMNAQAEKVAKIIAANSSNT
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Template Conservation                                                       
           
  
Template Sequence  RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS
Template Known Secondary structure  TT

TTSTTTS
GGG
TT
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   180.........190.........200.........210.........220.........230.........240.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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