Job Description P0AC02 Confidence 99.70% Date Thu Jan 5 11:16:49 GMT 2012 Rank 22 Aligned Residues 220 % Identity 10% Template c3mkrA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	A	G	C	S	G	S	K	E	E	V	P	D	N	P	P	N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	L	P	L	A	Q	A	A	I	D	R	F
Query Conservation
Alig confidence																																																			.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		C	I	N	E	A	Q	R	V	K	P	S	S	P	E	R	D	V	E	R	D	V	F	L	Y	R	A	Y	L	A	Q	R	K	Y	G	V	V	L	D	E	I	K	P	S	S	A	P	E	L	Q	.	.	.	.	.	.	A	V	R	M	F	A	E	Y	L	A	S	H	S	R	R	D	A	I	V	A	E	L	D	R	E
Template Known Secondary structure									S				S																		T	T									S		T	T	S						.	.	.	.	.	.												S	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																															.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	L	N	P	T	H	P	N	I	D	Y	V	M	Y	M	R	G	L	T	N	M	A	L	D	D	S	A	L	Q	G	F	F	G	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	D	R	D	P	Q	H	A	R	A	A	F	S
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		M	S	R	S	V	D	V	T	N	T	.	T	F	L	L	M	A	A	S	I	Y	F	Y	D	Q	N	P	D	A	A	L	R	T	L	H	Q	G	D	S	L	E	C	M	A	M	T	V	Q	I	L	L	K	L	D	R	L	D	L	A	R	K	E	L	K	K	M	Q	D	Q	D	E	D	A	T	L	T	Q	L	A	T
Template Known Secondary structure				S					S			.													T	T										T	T			S														T	T																	T	T
Template Predicted Secondary structure												.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	S	K	L	V	R	G	Y	P	N	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E	Y	S	V	A	E	Y	Y	T	E	R	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D	Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M
Query Conservation
Alig confidence																																																																		.	.	.
Template Conservation																																																																		.	.	.
Template Sequence		A	W	V	S	L	A	A	G	G	E	K	L	Q	D	A	Y	Y	I	F	Q	E	M	A	D	K	C	S	P	T	L	L	L	L	N	G	Q	A	A	C	H	M	A	Q	G	R	W	E	A	A	E	G	V	L	Q	E	A	L	D	K	D	S	G	H	P	.	.	.	E	T	L	I	N	L	V	V	L	S	Q	H	L
Template Known Secondary structure										T	T																S																	T	T																	T	T			.	.	.													T
Template Predicted Secondary structure																																																																		.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.
		226	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	M	N	A	Q	A	E	K	V	A	.	K	I	I	A	A	N	S	S	N	T
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		G	K	P	P	E	V	T	N	R	Y	L	S	Q	L	K	D	A	H	R	S	H
Template Known Secondary structure		T																		T	T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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