Job Description P0AC02 Confidence 98.43% Date Thu Jan 5 11:16:49 GMT 2012 Rank 99 Aligned Residues 186 % Identity 10% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.											.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																		.																																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																																					.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	I	Y	A	T	A	Q	Q	K	L	Q	D	G	N	W	.	R	Q	A	I	T	Q	L	E	A	L	D	N	R	Y	P	F	G	P	Y	S	Q	Q	V	Q	L	D	L	I	Y	A	Y	Y	K	N	A	D	.	.	.	.	.	.	.	.	.	.	L	P	L	A	Q	A	A	I	D	R	F	I	R	L	N	P	T
Query Conservation																		.																																					.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																		.	.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.
Template Sequence		Q	S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	.	.	.	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P	K
Template Known Secondary structure														S				S	S	T	T												T	T		.	.	.											G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.																																				.
Query SS confidence																						.	.																																				.
Query Sequence		H	P	N	I	D	Y	V	M	Y	M	R	G	L	T	N	M	A	L	D	D	.	.	S	A	L	Q	G	F	F	G	V	D	R	S	D	R	D	P	Q	H	A	R	A	A	F	S	D	F	S	K	L	V	R	G	Y	P	N	.	S	Q	Y	T	T	D	A	T	K	R	L	V	F	L	K	D	R	L	A	K	Y	E
Query Conservation																						.	.																																				.
Alig confidence						.	.	.														.	.																			.																	.
Template Conservation						.	.	.																																		.
Template Sequence		S	Y	G	T	.	.	.	W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	.	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S	L	I	T	R	N	F	S	N	Y	S	S	W
Template Known Secondary structure						.	.	.												S	S		T																T	T		.														T	T																		S	S
Template Predicted Secondary structure						.	.	.																																		.
Template SS confidence
		106	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		179	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.
Query Sequence		Y	S	V	A	E	Y	Y	T	E	R	.	.	.	.	.	.	.	.	G	A	W	V	A	V	V	N	R	V	E	G	M	L	R	D	Y	P	D	T	Q	A	T	R	D	A	L	P	L	M	E	N	A	Y	R	Q	M	Q	M	N
Query Conservation												.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																									.	.	.
Template Sequence		H	Y	R	S	C	L	L	P	Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N	A	F	F	T	D	P	N	D	Q	.	.	.	S	A	W	F	Y	H	R	W	L	L	G	R	A	E	P	V
Template Known Secondary structure								T	T	T	T					S	S														T						T	T			.	.	.									T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions