Job Description P0A862 Confidence 98.75% Date Thu Jan 5 11:07:00 GMT 2012 Rank 99 Aligned Residues 129 % Identity 15% Template c2pptA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:thioredoxin-2; PDBTitle: crystal structure of thioredoxin-2 Resolution 1.92 Å

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		1	.	.	.	.	.							.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.			30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.					.	.														.							.	.
Query SS confidence								.	.	.	.	.	.					.	.														.							.	.
Query Sequence		M	S	Q	T	V	H	.	.	.	.	.	.	F	Q	G	N	.	.	P	V	T	V	A	N	S	I	P	Q	A	G	S	.	K	A	Q	T	F	T	.	.	L	V	A	K	D	L	S	D	V	T	L	G	Q	F	A	G	K	R	K	V	L	N	I	F	P	S	I	D	T	G	V	C	A	A	S	V	R	K	F	N
Query Conservation								.	.	.	.	.	.					.	.														.							.	.
Alig confidence								.	.	.	.	.	.					.	.														.							.	.																									.
Template Conservation																																																																		.
Template Sequence		M	A	E	S	L	R	L	T	C	L	A	C	G	Q	A	N	K	V	P	S	D	R	L	A	A	G	P	K	C	G	I	C	G	A	G	L	I	T	G	K	V	A	G	I	D	P	A	I	L	A	R	A	E	R	D	D	L	P	L	L	V	D	F	W	.	A	P	W	C	G	P	C	R	Q	M	A	P	Q	F	Q
Template Known Secondary structure											T	T	T								G	G	G	T	T	S			B		T	T	T			B	S			S	S													T	T		S	S								.		T	T
Template Predicted Secondary structure																																																																		.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	A	T	E	I	D	N	T	V	V	L	C	I	S	A	D	L	P	F	A	Q	S	R	F	C	G	A	E	G	L	N	N	V	I	T	L	S	T	F	R	N	A	E	F	L	Q	A	Y	G	V	A	I	A	D	G	P	L	K	G	L	A	A	R	A	V	V	V	I	D	E	N	D	N	V	I	F	S	Q	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.										.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.										.
Template Sequence		A	A	A	A	T	L	A	G	Q	V	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	I	D	T	Q	A	H	P	A	V	A	G	R	H	R	I	Q	.	.	.	.	.	.	.	.	.	G	I	P	A	F	I	L	F	H	.	K	G	R	E	L	A	R	A	A
Template Known Secondary structure								T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T	S	T						T	T			.	.	.	.	.	.	.	.	.	S	S	S							.	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.										.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.																							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	I	T	T	E	P	D	Y	E	A	A	L	A	V	L	K
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		G	.	.	.	.	.	A	R	P	A	S	E	L	V	G	F	V	R
Template Known Secondary structure		S	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		133						.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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