Job Description P77170 Confidence 71.37% Date Wed Jan 25 15:21:10 GMT 2012 Rank 359 Aligned Residues 42 % Identity 21% Template c3iydF_ PDB info PDB header:transcription/dna Chain: F: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		154	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.					.	.	190	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																							.	.	.	.
Query SS confidence														.	.	.	.	.																							.	.	.	.
Query Sequence		E	E	Q	K	Q	A	V	F	E	R	I	K	.	.	.	.	.	S	G	V	S	I	S	A	I	A	R	E	F	K	T	S	R	Q	T	I	L	R	A	.	.	.	.	K	A	K	L	Q	T	P	D
Query Conservation														.	.	.	.	.																							.	.	.	.
Alig confidence														.	.	.	.	.																							.	.	.	.
Template Conservation
Template Sequence		T	A	R	E	A	K	V	L	R	M	R	F	G	I	D	M	N	T	D	H	T	L	E	E	V	G	K	Q	F	D	V	T	R	E	R	I	R	Q	I	E	A	K	A	L	R	K	L	R	H	P	S
Template Known Secondary structure														T	S	S	S					S	T	T	G	G	G	T	T	T	S	S		S	S											T	T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions