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Job DescriptionP35340
Confidence99.86%DateWed Jan 25 15:20:51 GMT 2012
Rank102Aligned Residues255
% Identity18%Templated1kf6a2
SCOP infoFAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
Resolution2.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   213......220.........230..... ....240.... .....250.........260.........270.........280........
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Query Sequence  YDVLIVGSGPAGAAAAIYSARKG. . IRTGLMGER. . FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ
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Template Sequence  ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLC. . . . . . .
Template Known Secondary structure 
S

S
TT

SS
GGGSGGGG

S



STT

TTT
S.......
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   5....10.........20.........30.........40.........50.........60.........70.......
 
   289290.........300.........310.........320.........330.........340.........350.........360........
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Query Sequence  SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EQDVVDYFVHHCPTEMTQLELWGCPWSRRPDGSV
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TT



B
TTSSB
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   78.80.........90.........100.........110.
 
   369370.........380.........390.........400.........410.........420.........430.........440........
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Query Sequence  EAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQ
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Template Sequence  NVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMA
Template Known Secondary structure 

B

TT
SS


STT
TT
TTTTTTTTT
S

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   112.......120.........130.........140.........150.........160.........170.........180.........190.
 
   449450.... .....460.........470.........480.........490.. .......500....
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Query Sequence  IGLLPN. . . . . . . . . . . . . . . . TNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTV. . . . . . . . PYKQIIIATGEG
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Template Sequence  TGGAGRVYRYNTNGGIVTGDGMGMALSHGVPLRDMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFG
Template Known Secondary structure 



GGGSSS
SS
TT
S
TTT






TTSB
SSBT
GGG
SSSTTS

TT
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   192.......200.........210.........220.........230.........240.........250.........260.........270.
 
   505....510.........520
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Query Sequence  AKASLSAFDYLIRTKT
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Template Sequence  RLAGEQATERAATAGN
Template Known Secondary structure  S


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   404.....410.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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