Job Description P35340 Confidence 99.94% Date Wed Jan 25 15:20:51 GMT 2012 Rank 87 Aligned Residues 285 % Identity 17% Template c3h8lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism Resolution 2.57 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.											.	.
Query SS confidence																							.	.	.											.	.
Query Sequence		D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	.	.	.	G	I	R	T	G	L	M	G	E	R	.	.	F	G	G	Q	I	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	I	D	S	Q
Query Conservation																							.	.	.											.	.
Alig confidence																							.	.	.											.	.																				.	.	.	.	.
Template Conservation																																																									.	.	.	.	.
Template Sequence		K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	.	.	.	.	.	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	G	T
Template Known Secondary structure								S	S															G	G	G	S							S	S	S							S	S					S	S							.	.	.	.	.									T	G	G	G	T
Template Predicted Secondary structure																																																									.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.																													.	.	.	340
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	T	K
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	V	E	K	I	D	A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	I	G	S	G	P
Template Known Secondary structure		.	.						T	T	T	T							T	T	S								S												G	G	G	S	B	T								S	S	S	T	T														S
Template Predicted Secondary structure		.	.
Template SS confidence
				78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.									.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.																	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.																	.	.	.	.
Query Sequence		G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	.	.	.	.	.	.	.	.	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I
Query Conservation																																							.	.	.	.	.	.	.	.																	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation
Template Sequence		F	Y	Q	G	H	N	P	K	P	K	V	P	E	N	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L
Template Known Secondary structure		B					S	S			B	S		T	T	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.
Predicted Secondary structure																																																					.																			.
Query SS confidence																																																					.																			.
Query Sequence		I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	E	.	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	.	T	N	V	K	G	V	F	A	A
Query Conservation																																																					.																			.
Alig confidence															.	.	.	.	.	.	.	.	.	.																													.																			.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	N	F	K	I	K	E	I	R	E	H	E	.	.	.	.	.	.	.	.	.	.	I	V	D	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	N	P	A	L	K	N	S	T	P	D	L	V	D	D	G	G	F	I	P	T	D	L	N	M	V	S	I	K	Y	D	N	V	Y	A	V
Template Known Secondary structure				S								S	S		.	.	.	.	.	.	.	.	.	.				T	T	S						S																T	S		G	G	G	S		T	T	S		B		B	B	T	T	S	B	B	S	S		T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		487	.	.	490	.	.	.	.		.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		G	D	C	T	T	V	P	Y	.	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L
Query Conservation										.
Alig confidence										.
Template Conservation
Template Sequence		G	D	A	N	S	M	T	V	P	K	L	G	Y	L	A	V	M	T	G	R	I	A	A	Q	H	L	A	N	R	L
Template Known Secondary structure		G	G	G	B	T	T			S																					T
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions