Phyre 2 alignment of P35340 with c2eq7B

Job Description P35340
Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012

Rank 30 Aligned Residues 295

% Identity 23% Template c2eq7B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.																					.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	T	G	L	M	G	E	.	.	R	F	G	G	Q	I	L	D	T	V	D	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	V	P	K	T	E	G	Q	K	L	A
Query Conservation																																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	D	L	L	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	M	K	V	G	V	V	E	K	E	K	A	L	G	G	T	C	L	R	V	G	C	I	P	S	K	A	L	L	E	T	T	E	R	I	Y	E	A	K	K	G	L	L	G	A	K	V	K	G	V	E	L	D	L	P	A	L	M
Template Known Secondary structure									S													T	T								S	S	S	S	S	S							S																						T	T				S
Template Predicted Secondary structure
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.

	271	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.
Query SS confidence								.	.	.	.
Query Sequence	G	A	L	K	V	H	V	.	.	.	.	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K	G	V	T	Y	C	P
Query Conservation								.	.	.	.
Alig confidence								.	.	.	.																																																										.	.	.
Template Conservation																																																																					.	.	.
Template Sequence	A	H	K	D	K	V	V	Q	A	N	T	Q	G	V	E	F	L	F	K	K	N	G	I	A	R	H	Q	G	T	A	R	F	L	S	E	R	K	V	L	V	E	E	T	G	E	E	L	E	A	R	Y	I	L	I	A	T	G	S	A	P	L	I	P	P	W	A	Q	V	.	.	.	D	Y	E	R	V	V	T	S	T
Template Known Secondary structure																					T	T						S					S	S	S	S					T	T	T	T																				T	T	B			.	.	.		S	S	S
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.

	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G
Query Conservation																																																.	.	.	.	.
Alig confidence																																																.	.	.	.	.
Template Conservation
Template Sequence	E	A	L	S	F	P	E	V	P	K	R	L	I	V	V	G	G	G	V	I	G	L	E	L	G	V	V	W	H	R	L	G	A	E	V	I	V	L	E	Y	M	D	R	I	L	P	T	M	D	L	E	V	S	R	A	A	E	R	V	F	K	K	Q	G	L	T	I	R	T	G	V	R	V	T	A	V	V	P	E	A
Template Known Secondary structure			T	S		S	S			S								S													T	T								S	S	S	S	S		T	T	S																T						S										T
Template Predicted Secondary structure
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

	422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q	I	I
Query Conservation																																						.	.	.
Alig confidence					.	.	.	.	.	.																												.	.	.																																				.
Template Conservation					.	.	.	.	.	.																																																																		.
Template Sequence	K	G	A	R	.	.	.	.	.	.	V	E	L	E	G	G	E	V	L	E	A	D	R	V	L	V	A	V	G	R	R	P	Y	T	E	G	L	S	L	E	N	A	G	L	S	T	D	E	R	G	R	I	P	V	D	E	H	L	R	T	R	V	P	H	I	Y	A	I	G	D	V	V	R	G	P	.	M	L	A	H
Template Known Secondary structure	T				.	.	.	.	.	.				T	T	S						S						S							T	T			G	G	G	G	T					T	T	S						T	T	S	B		S	S	T	T					G	G	G	S	S	S		.
Template Predicted Secondary structure					.	.	.	.	.	.																																																																		.
Template SS confidence
	239	240	.	.							.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.

	499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence	K	A	S	E	E	G	I	A	A	V	E	H	M	V	R	G	F	G	H
Template Known Secondary structure																S
Template Predicted Secondary structure
Template SS confidence
	312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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