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Job DescriptionP35340
Confidence100.00%DateWed Jan 25 15:20:51 GMT 2012
Rank56Aligned Residues296
% Identity21%Templatec2cfyB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of human thioredoxin reductase 1
Resolution2.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   213......220.........230.........240.... .....250....... ..260
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Query Sequence  YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER. . . . . . . . . . FGGQILDTVDIEN. . . . . . . . . . . . . . . . . . . . . . YIS
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Template Sequence  YDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEE
Template Known Secondary structure 

STTT







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   13......20.........30.........40.........50.........60.........70.........80.........90..
 
   261........270.........280.... .....290.........300.........310 .........320.........330...
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Query Sequence  VPKTEGQKLAGALKVHVDEYDVDV. . . . . IDSQSASKLIPAAVEGGLHQIETASG. . AVLKARSIIVATGAKWRNMNVPG
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Template Sequence  TVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG
Template Known Secondary structure  S



TT

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   93......100.........110.........120.........130.........140.........150.........160.........170..
 
   334.....340.........350.........360.........370.........380.........390... ......400.........
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Query Sequence  EDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD. . . . QVLQDKLRSLKNVDII
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Template Sequence  DKEYCI. . . . SSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI
Template Known Secondary structure 
B....
TT
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S

STT

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   173..... .180.........190.........200.........210.........220.........230.........240........
 
   410.........420 .........430.........440.........450........ .460......... 470.........480..
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Query Sequence  LNAQTTEVKGD. . . GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWL. . . EGAVERNRMGE. IIIDAKCETNVKG
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Template Sequence  RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEEQTNVPY
Template Known Secondary structure  S
STT
SSSS
S
S
S
SSS
GGGTT



TTT

B


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   249250.........260.........270.........280.........290.........300.........310.........320........
 
   483......490.........500.........510..
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Query Sequence  VFAAGDCTTVPYKQIIIATGEGAKASLSAF
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Template Sequence  IYAIGDILEDKVELTPVAIQAGRLLAQRLY
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STTBTTS


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   329330.........340.........350........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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