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Job DescriptionP35340
Confidence100.00%DateWed Jan 25 15:20:51 GMT 2012
Rank44Aligned Residues290
% Identity21%Templatec2cduB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:nadph oxidase; PDBTitle: the crystal structure of water-forming nad(p)h oxidase from2 lactobacillus sanfranciscensis
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DVLIVGSGPAGAAAAIYSARK. . GIRTGLMGERFGGQILDTVDIENYIS. . VPKTEGQKLAGALKVHVDEYDVDVIDSQS
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Template Sequence  KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMN. . DNISFLSGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQ
Template Known Secondary structure 

S
TT

SS..S

SB


TT
SGGG
GGGGBS

TT

S
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   290.........300.........310.........320.........330...... ...340.........350.........360......
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Query Sequence  ASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQ. . . YRTKGVTYCPHCDGPLFKGKRVAVIGGGNS
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Template Sequence  VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYI
Template Known Secondary structure  GGGTTTT


S





S
TTTTSTT
SSGGG
S

S
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   367..370.........380.........390... ......400.........410.........420.........430.........440
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Query Sequence  GVEAAIDLAGIVEHVTLLEFAPEMKAD. . . . . . QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNI
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Template Sequence  GAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEII. . . . . . TKTLDGKEI
Template Known Secondary structure  TTT
SSSSTTTTTS
TTSS
TT......TTS
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   161........170.........180.........190.........200.........210.........220..... ....230....
 
   441........450.........460.........470.........480.........490... ......500.........510.
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Query Sequence  ELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVP. . . . . . . . . YKQIIIATGEGAKASLSA
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Template Sequence  KSDIAILCIGFRPNTELLKGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNL
Template Known Secondary structure  S
S


GGGTTTS
B
TT

B


TTSB
SSTT
GGGB
GGGT



TS
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Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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