Job Description P35340 Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012 Rank 26 Aligned Residues 295 % Identity 22% Template c2a8xA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase; PDBTitle: crystal structure of lipoamide dehydrogenase from2 mycobacterium tuberculosis Resolution 2.40 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.																						.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	T	G	L	M	G	E	R	.	F	G	G	Q	I	L	D	T	V	D	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	V	P	K	T	E	G	Q
Query Conservation																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	T	H	Y	D	V	V	V	L	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	L	S	T	A	I	V	E	P	K	Y	W	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	L	R	N	A	E	L	V	H	I	F	T	K	D	A	K	A	F	G	I	S	G	E	V	T	F	D	Y	G
Template Known Secondary structure													S													T	T								S	S		T	T							S																					T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.								.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																			.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.
Query Sequence		K	L	A	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	.	.	.	.	.	.	.	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K
Query Conservation																			.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																																																								.
Template Conservation																																																																																	.
Template Sequence		I	A	Y	D	R	S	R	K	V	A	E	G	R	V	A	G	V	H	F	L	X	K	K	N	K	I	T	E	I	H	G	Y	G	T	F	A	D	A	N	T	L	L	V	D	L	N	D	G	G	T	E	S	V	T	F	D	N	A	I	I	A	T	G	S	S	T	R	L	V	P	G	T	S	L	S	A	N	V	V	.
Template Known Secondary structure																									T	T											S	S	S	S							T	T	S																						T	T				B	T	T			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T
Query Conservation																																																							.	.	.	.	.
Alig confidence		.	.	.																																																			.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	T	Y	E	E	Q	I	L	S	R	E	L	P	K	S	I	I	I	A	G	A	G	A	I	G	X	E	F	G	Y	V	L	K	N	Y	G	V	D	V	T	I	V	E	F	L	P	R	A	L	P	N	E	D	A	D	V	S	K	E	I	E	K	Q	F	K	K	L	G	V	T	I	L	T	A	T	K	V	E
Template Known Secondary structure		.	.	.							T		S	S			S								S													T	T								S	S	S	S	S	S	T	T	S																T						S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V
Query Conservation																																													.	.	.
Alig confidence																.	.	.																											.	.	.
Template Conservation																.	.	.
Template Sequence		S	I	A	D	G	G	S	Q	V	T	V	T	V	T	.	.	.	K	D	G	V	A	Q	E	L	K	A	E	K	V	L	Q	A	I	G	F	A	P	N	V	E	G	Y	G	L	D	K	A	G	V	A	L	T	D	R	K	A	I	G	V	D	D	Y	X	R	T	N	V	G	H	I	Y	A	I	G	D	V	N	G	L
Template Known Secondary structure							S	S								.	.	.	S	S	S								S						S							S	S	S						T			B		T	T	S	S	B				T	T	S	B		S	S	T	T					G	G	G	G		S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		L	.	Q	L	A	H	V	A	E	A	Q	G	V	V	A	A	E	T	I	A
Template Known Secondary structure		S	.		S
Template Predicted Secondary structure			.
Template SS confidence
		314		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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