Job Description P35340 Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012 Rank 48 Aligned Residues 289 % Identity 22% Template c1xdiA_ PDB info PDB header:unknown function Chain: A: PDB Molecule:rv3303c-lpda; PDBTitle: crystal structure of lpda (rv3303c) from mycobacterium tuberculosis Resolution 2.81 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.																		.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																								.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	.	.	.	G	I	R	T	G	L	M	G	E	R	.	F	G	G	Q	I	L	D	T	V	D	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G
Query Conservation																								.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	I	V	I	L	G	G	G	P	A	G	Y	E	A	A	L	V	A	A	T	S	H	P	E	T	T	Q	V	T	V	I	D	C	D	G	I	G	G	A	A	V	L	D	D	C	V	P	S	K	T	F	I	A	S	T	G	L	R	T	E	L	R	R	A	P	H	L	G	F	H	K	I	S	L	P	Q	I	H	A
Template Known Secondary structure										S															T	T	T								S	S		T	T						T	S																		T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		272	.	.	.	.	.												.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		A	L	K	V	H	V	.	.	.	.	.	.	.	.	.	.	.	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	.	.	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R
Query Conservation								.	.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																			.	.																								.	.	.
Template Conservation																																																																														.	.	.
Template Sequence		R	V	K	T	L	A	A	A	Q	S	A	D	I	T	A	Q	L	L	S	M	G	V	Q	V	I	A	G	R	G	E	L	I	D	S	T	P	G	L	A	R	H	R	I	K	A	T	A	A	D	G	S	T	S	E	H	E	A	D	V	V	L	V	A	T	G	A	S	P	R	I	L	P	S	A	Q	P	.	.	.	D
Template Known Secondary structure																					T	T						S							S	S	S			S	S								T	T	S								S														G	G	G			.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.				.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q
Query Conservation																																																									.	.	.	.	.
Alig confidence																																																									.	.	.	.	.
Template Conservation
Template Sequence		G	E	R	I	L	T	W	R	Q	L	Y	D	L	D	A	L	P	D	H	L	I	V	V	G	S	G	V	T	G	A	E	F	V	D	A	Y	T	E	L	G	V	P	V	T	V	V	A	S	Q	D	H	V	L	P	Y	E	D	A	D	A	A	L	V	L	E	E	S	F	A	E	R	G	V	R	L	F	K	N	A	R
Template Known Secondary structure		S	S	S				G	G	G	G	G	G		S	S			S	S					S		S													T	T								S	S	S	S	S	S			S	S														T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T
Query Conservation																																															.	.	.
Alig confidence														.	.	.	.	.	.																												.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		A	A	S	V	T	R	T	G	A	G	V	L	.	.	.	.	.	.	V	T	M	T	D	G	R	T	V	E	G	S	H	A	L	M	T	I	G	S	V	P	N	T	S	G	L	G	L	E	R	V	G	I	Q	L	G	R	G	N	Y	L	T	V	D	R	V	S	R	T	L	A	T	G	I	Y	A	A	G	D	C	T
Template Known Secondary structure									S	S	S			.	.	.	.	.	.				T	T	S						S													S	S	S		T	T	T	T	T				B	T	T	T	B					S	S	S	B		S	S	T	T					S	G	G	G
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.							.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		G	L	L	.	P	L	A	S	V	A	A	M	Q	G	R	I	A	M	Y	H	A
Template Known Secondary structure		T	S		.	S
Template Predicted Secondary structure					.
Template SS confidence
		320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions