Phyre 2 alignment of P35340 with c1vqwB

Job Description P35340
Confidence 99.93% Date Wed Jan 25 15:20:51 GMT 2012

Rank 89 Aligned Residues 281

% Identity 18% Template c1vqwB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																						.	.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	.	.	G	I	R	T	G	L	M	G	E	.	.	R	F	G	G	Q	I	L	D	T	V	D	I	E	N	Y	I	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.										.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	I	A	I	I	G	A	G	P	S	G	L	V	T	A	K	A	L	L	A	E	K	A	F	D	Q	V	T	L	F	E	R	R	G	S	P	G	G	V	W	N	Y	T	S	T	L	S	N	K	L	P	V	P	S	T	N	P	I	L	T	T	E	P	I	V	G	P	A	A	L	P	V	Y	P	S	P	L	Y	R	D
Template Known Secondary structure								S												T	T	S			S							S	S	S	S	S	S	G	G	G	S			S				S				S	S	B			T	T						B			S	S	S			B							T	T
Template Predicted Secondary structure
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

																							262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	K	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	.	.	.	V	L	K	A	R
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.
Template Conservation
Template Sequence	L	Q	T	N	T	P	I	E	L	X	G	Y	C	D	Q	S	F	K	P	Q	T	L	Q	F	P	H	R	H	T	I	Q	E	Y	Q	R	I	Y	A	Q	P	L	L	P	F	I	K	L	A	T	D	V	L	D	I	E	K	K	D	G	S	W	V	V	T	Y	K	G	T	K	A	G	S	P	I	S	K	D	I	F	D
Template Known Secondary structure		B		S	S		T	T	T	S	S		T	T	S				T	T			S	S		B													G	G	G	G	G	G				S										T	T									S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

	317	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure								.	.																.	.	.	.
Query SS confidence								.	.																.	.	.	.
Query Sequence	S	I	I	V	A	T	G	.	.	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	.	.	.	.	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M
Query Conservation								.	.																.	.	.	.
Alig confidence								.	.																.	.	.	.
Template Conservation
Template Sequence	A	V	S	I	C	N	G	H	Y	E	V	P	Y	I	P	N	I	K	G	L	D	E	Y	A	K	A	V	P	G	S	V	L	H	S	S	L	F	R	E	P	E	L	F	V	G	E	S	V	L	V	V	G	G	A	S	S	A	N	D	L	V	R	H	L	T	P	V	A	K	H	P	I	Y	Q	S	L	L	G	G	G
Template Known Secondary structure								S	S	S	S	B		B				B	T								S	T	T	S				G	G	G				G	G	G	G	T	T									S											T	T	T	S		S	S						T	T
Template Predicted Secondary structure
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

	391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	D	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	E	G	A	V	E	R	N	R	M	G	E	I
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Sequence	D	I	Q	.	.	.	.	.	.	.	.	.	.	.	N	E	S	L	Q	Q	V	P	E	I	T	K	F	D	P	T	T	R	E	I	Y	.	.	.	.	.	.	.	L	K	G	G	K	V	L	S	N	I	D	R	V	I	Y	C	T	G	Y	L	Y	S	V	P	F	P	S	L	A	K	L	K	S	P	E	T	K	L
Template Known Secondary structure	S		B	.	.	.	.	.	.	.	.	.	.	.		S	S												T	T	T	T				.	.	.	.	.	.	.		T	T	S							S								B											S			S	T	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template SS confidence
	248	.	250												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.								.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	471	.	.	.	.	.	.	.	.	480		.	.	.	.	.	.	.	.	.	490					.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure											.											.	.	.	.
Query SS confidence											.											.	.	.	.
Query Sequence	I	I	D	A	K	C	E	T	N	V	.	K	G	V	F	A	A	G	D	C	T	.	.	.	.	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F
Query Conservation											.											.	.	.	.
Alig confidence											.											.	.	.	.
Template Conservation
Template Sequence	I	D	D	G	S	H	V	H	N	V	Y	Q	H	I	F	Y	I	P	D	P	T	L	A	F	V	G	L	A	L	H	V	V	P	F	P	T	S	Q	A	Q	A	A	F	L	A	R	V
Template Known Secondary structure		S	S	S	S				S			T	T	T			T	T		T	T					S			B	S	S
Template Predicted Secondary structure
Template SS confidence
	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions