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Job DescriptionP35340
Confidence100.00%DateWed Jan 25 15:20:51 GMT 2012
Rank23Aligned Residues302
% Identity30%Templatec1vdcA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   209210.........220.........230.........240... ......250.........260.. .......270.........280.
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Query Sequence  KRDAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE. . . . . . RFGGQILDTVDIENYISVP. KTEGQKLAGALKVHVDEYD
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Template Sequence  ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG
Template Known Secondary structure 

STT




SSBTTB
TT
GGGG
S

STT
TT
TT
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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   282.......290.........300.........310.........320.........330...... ...340.........350.....
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Query Sequence  VDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQ. . . . . . YRTKGVTYCPHCDGPLFKG
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Template Sequence  TTIFTETVTKVDFS. . . . . SKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRN
Template Known Secondary structure 






S.....SSS
SS







BT
SSSSS

BTTTS
TTSGGGTT
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   77..80.........90 .........100.........110.........120.........130.........140.........150.
 
   356...360.........370.........380.........390.........400.........410.........420 .........430...
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Query Sequence  KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD. . GSKVVGLEYRDRV
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Template Sequence  KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVV
Template Known Secondary structure  S

STTTSS
SSSS

S
T
TT
SSSSSSSTT
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   146...150.........160.........170.........180.........190.........200.........210.........220.....
 
   434.....440.........450.........460.........470.... .....480.........490.........500.........510..
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Query Sequence  SGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDA. KCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF
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Template Sequence  TGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE
Template Known Secondary structure  T


S
S
S
GGGTTSS
B
TTS
B


TTS
B
SSTT
GGGG
SS


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   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   513..
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Query Sequence  DYL
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Template Sequence  HYL
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   311..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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