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Job DescriptionP35340
Confidence100.00%DateWed Jan 25 15:20:51 GMT 2012
Rank37Aligned Residues295
% Identity24%Templatec1v59B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   210.........220.........230.........240... ......250....... ..260....
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Query Sequence  RDAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE. . RFGGQILDTVDIEN. . . . . . . . . . . . . . . . . . . . . . . YISVPKT
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Template Sequence  NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI
Template Known Secondary structure 

STT

SSSSSSSSSGGGT


SS



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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   265....270......... 280.........290.........300.........310.........320.......
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Query Sequence  EGQKLAGALKVHVDE. . . . . . . . . . . . . . . . . YDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR
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Template Sequence  NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLE. . . . GTVKEDHILDVKNIIVATGSEVT
Template Known Secondary structure 
TT
SSSSS

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   83......90.........100.........110.........120.........130..... ....140.........150........
 
   328.330.........340.........350.........360.........370.........380.........390... ......400..
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Query Sequence  NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKAD. . . . . QVLQDKLRS
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Template Sequence  PFPGIEI. . . DEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLK
Template Known Secondary structure 

TT


...BTTT
TT
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S

STT

SSSSSSSSS
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   159160..... ....170.........180.........190.........200.........210.........220.........230.....
 
   403......410.........420 .........430.........440.........450...... ...460.........470........
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Query Sequence  LKNVDIILNAQTTEVKGD. GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTN. . . WLEGAVERNRMGEIIIDAKCET
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Template Sequence  KQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNS
Template Known Secondary structure  TT
TTTTTTTTTTS
S


TTS
T

B
TTS
B


TTSB
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   236...240.........250.........260.........270.........280.........290.........300.........310.....
 
   479480.........490.........500.........510..
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Query Sequence  NVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAF
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Template Sequence  KFPHIKVVGDVTFGP. MLAHKAEEEGIAAVEMLK
Template Known Secondary structure  SSTT
GGGSSS
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   316...320.........330 .........340........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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