Job Description P35340 Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012 Rank 16 Aligned Residues 295 % Identity 19% Template c1gv4A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:programed cell death protein 8; PDBTitle: murine apoptosis-inducing factor (aif) Resolution 2.0 Å

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		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	E	L	N	K	R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	.	.	G	I	R	T	G	L	M	G	E	R	F	G	G	Q	I	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.																																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Q	I	R	A	P	S	H	V	P	F	L	L	I	G	G	G	T	A	A	F	A	A	A	R	S	I	R	A	R	D	P	G	A	R	V	L	I	V	S	E	D	P	E	L	P	Y	M	R	P	P	L	S	K	E	L	W	F	S	D	D	P	N	V	T	K	T	L	Q	F	R	Q	W	N	G	K	E	R	S	I
Template Known Secondary structure																S		S														S	T	T								S	S	S	S			B		S	G	G	G	G	T	G	G	G	S				T	T										T	T	S					S
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
												271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																																				.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		Y	F	Q	P	P	S	F	Y	V	S	A	Q	D	L	P	N	I	E	N	G	G	V	A	V	L	T	G	K	K	V	V	H	L	D	V	.	.	.	.	.	R	G	N	M	V	K	L	N	D	G	S	Q	I	T	F	E	K	C	L	I	A	T	G	G	T	P	R	S	L	S	A	I	D	R	A	G	A	E	V	K
Template Known Secondary structure		B	S	S		G	G	G		B		G	G	G	G	G	G	S	T	T								S								T	.	.	.	.	.	T	T	T					T	T	S																								T	S
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
				336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.					380	.	.	.	.	.	.	.	.	.	390	.	.	.							.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure		.	.																																													.	.	.	.															.	.	.	.	.	.
Query SS confidence		.	.																																													.	.	.	.															.	.	.	.	.	.
Query Sequence		.	.	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	.	.	.	.	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L
Query Conservation		.	.																																													.	.	.	.															.	.	.	.	.	.
Alig confidence		.	.																																													.	.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	T	T	L	F	R	K	I	G	D	F	R	A	L	E	K	I	S	R	E	V	K	S	I	T	V	I	G	G	G	F	L	G	S	E	L	A	C	A	L	G	R	K	S	Q	A	S	G	I	E	V	I	Q	L	F	P	E	K	G	N	M	G	K	I	L	P	Q	Y	L	S	N	W	T	M	E	K	V	K	R
Template Known Secondary structure		T	T						S												T	T		S								S																										S	S	S	S	T	T	T	T	T	S														T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure																																																										.									.
Query SS confidence																																																										.									.
Query Sequence		K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	E	.	G	A	V	E	R	N	R	M	.	G	E	I	I	I	D	A	K	C	E	T	N	V	K
Query Conservation																																																										.									.
Alig confidence																								.	.	.	.	.	.																													.									.													.
Template Conservation																								.	.	.	.	.	.																																																			.
Template Sequence		E	G	V	K	V	M	P	N	A	I	V	Q	S	V	G	V	S	G	G	R	L	L	.	.	.	.	.	.	I	K	L	K	D	G	R	K	V	E	T	D	H	I	V	T	A	V	G	L	E	P	N	V	E	L	A	K	T	G	G	L	E	I	D	S	D	F	G	G	F	R	V	N	A	E	L	Q	A	R	.	S
Template Known Secondary structure		T	T						S										T	T				.	.	.	.	.	.				T	T	S						S													T					T	T			B		T	T	T		S					T	T	S				.	T
Template Predicted Secondary structure																								.	.	.	.	.	.																																																			.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.							380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.		430
		482	.	.	.	.	.	.	.	490									.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure											.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.
Query Sequence		G	V	F	A	A	G	D	C	T	.	.	.	.	.	.	.	.	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A
Query Conservation											.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	W	V	A	G	D	A	A	C	F	Y	D	I	K	L	G	R	R	R	V	E	H	H	D	H	A	V	V	S	G	R	L	A	G	E	N	M
Template Known Secondary structure		T					G	G	G						T	T	T
Template Predicted Secondary structure
Template SS confidence
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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