Job Description P35340 Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012 Rank 3 Aligned Residues 337 % Identity 16% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.																					.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	T	D	R	N	V	M	G	V	P	A	V	F	V	N	G	K	E	F	G	Q	G	R	M	T	L	T	E	I	V	A	.	K	I	D	T	G	A	E	K	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	L	N	K	R	D	A	Y	D	V	L	I	V	G	S
Query Conservation																																		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	F	S	D	N	P	L	G	L	T	C	G	M	V	C	P	T	S	D	L	C	V	G	G	C	N	L	Y	A	T	E	E	G	S	I	N	I	G	G	L	Q	Q	F	A	S	E	V	F	K	A	M	N	I	P	Q	I	R	N	P	C	L	P	S	Q	E	K	M	P	E	A	Y	S	A	K	I	A	L	L	G	A
Template Known Secondary structure							T	T										G	G	G	S	G	G	G	G		G	G	G	G	S	T	T																				T				B			T	T	S			G	G	G	S		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	.	T	G	L	M	G	E	R	F	G	G	Q	I	L	D	T	V	D	I	E	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E
Query Conservation																			.
Alig confidence																			.																										.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Sequence		G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	.	.	.	.	.	D	V	V	N	F	E	I	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S														T									S	S	S	S		S	T					T	S		T	T	T	S			.	.	.	.	.												T	T	T						S			B	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.						.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.																.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	.	K	W	R	N	M	N	V	P	G	E	D	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G
Query Conservation																											.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	S	E	N	E	I	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E	P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	L	G	A
Template Known Secondary structure		.	S	T	T	S	B								T	T																	G	G	G	T	T			T	T	T	T																	T	T	T		S	S									S
Template Predicted Secondary structure		.
Template SS confidence
			262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.			.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																	.											.	.																																													.	.	.	.	.	.	.	.
Query SS confidence																	.											.	.																																													.	.	.	.	.	.	.	.
Query Sequence		G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	.	E	H	V	T	L	L	E	F	A	P	.	.	E	M	K	A	D	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	.	.	.	.	.	.	.	.
Query Conservation																	.											.	.																																													.	.	.	.	.	.	.	.
Alig confidence																	.											.	.												.																																	.	.	.	.	.	.	.	.
Template Conservation																																									.
Template Sequence		G	D	T	A	F	D	C	A	T	S	A	L	R	C	G	A	R	R	V	F	L	V	F	R	K	G	F	V	N	I	R	A	V	P	E	E	V	E	L	.	A	K	E	E	K	C	E	F	L	P	F	L	S	P	R	K	V	I	V	K	G	G	R	I	V	A	V	Q	F	V	R	T	E	Q	D	E	T	G	K	W
Template Known Secondary structure		S													T	T		S							S	S		G	G	G			S								.				T	T						S										S	S	S													S	S	S
Template Predicted Secondary structure																																									.
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
				433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.		.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
Predicted Secondary structure		.	.																											.	.	.																.
Query SS confidence		.	.																											.	.	.																.
Query Sequence		.	.	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	.	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q	I	I	I	A	T	G	E	G	A	K
Query Conservation		.	.																											.	.	.																.
Alig confidence		.	.																											.	.	.																.																					.
Template Conservation																																																																					.
Template Sequence		N	E	D	E	D	Q	I	V	H	L	K	A	D	V	V	I	S	A	F	G	S	V	L	R	D	P	K	V	K	E	A	L	S	P	I	K	F	N	R	W	D	L	P	E	V	D	P	E	T	M	Q	T	S	E	P	W	V	F	A	G	G	D	I	V	G	M	A	.	N	T	T	V	E	S	V	N	D	G	K	Q
Template Known Secondary structure														S																		T	T	T	T	S		B		T	T	S	S	B				T	T	T		B		S	S	T	T					G	G	G	G	T			.		S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.
		507	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	L	S	A	F	D	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	W	Y	I	H	K	Y	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		499	500	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions