Job Description P35340 Confidence 100.00% Date Wed Jan 25 15:20:51 GMT 2012 Rank 49 Aligned Residues 292 % Identity 23% Template c1ebdB_ PDB info PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase Resolution 2.60 Å

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		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.																						.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	T	G	L	M	G	E	R	.	F	G	G	Q	I	L	D	T	V	D	I	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	I	S	V	P	K	T	E	G	Q	K	L	A
Query Conservation																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	E	T	L	V	V	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	G	Q	K	V	T	I	V	E	K	G	N	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	I	S	A	S	H	R	Y	E	Q	A	K	H	S	E	E	M	G	I	K	A	E	N	V	T	I	D	F	A	K	V	Q
Template Known Secondary structure			S							S													T	T								S	S		T	T							S																			T		G	G	G	T					S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.							.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		G	A	L	K	V	H	V	D	E	Y	D	V	D	V	.	.	.	.	.	.	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K	G	V	T	Y
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																																								.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		E	W	K	A	S	V	V	K	K	L	T	G	G	V	E	G	L	L	K	G	N	K	V	E	I	V	K	G	E	A	Y	F	V	D	A	N	T	V	R	V	V	N	G	D	S	A	Q	T	Y	T	F	K	N	A	I	I	A	T	G	S	R	P	I	E	L	P	N	F	K	F	S	N	R	I	L	.	.	.	.	D
Template Known Secondary structure																						T	T						S							T	T							T	T								S														T	T				S	S	S			.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G
Query Conservation																																																			.	.	.	.	.
Alig confidence																																																			.	.	.	.	.
Template Conservation
Template Sequence		S	T	G	A	L	N	L	G	E	V	P	K	S	L	V	V	I	G	G	G	Y	I	G	I	E	L	G	T	A	Y	A	N	F	G	T	K	V	T	I	L	E	G	A	G	E	I	L	S	G	F	E	K	Q	M	A	A	I	I	K	K	R	L	K	K	K	G	V	E	V	V	T	N	A	L	A	K	G	A	E	E
Template Known Secondary structure							T		S	S			S								S														T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.				.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	.	.	.	E	G	A	V	E	R	N	R	M	G	E	I	I	I	D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	K	Q
Query Conservation																																									.	.	.
Alig confidence												.	.	.																											.	.	.																																				.
Template Conservation												.	.	.																																																																	.
Template Sequence		R	E	D	G	V	T	V	T	Y	E	.	.	.	A	N	G	E	T	K	T	I	D	A	D	Y	V	L	V	T	V	G	R	R	P	N	T	D	E	L	G	L	E	Q	I	G	I	K	M	T	N	R	G	L	I	E	V	D	Q	Q	C	R	T	S	V	P	N	I	F	A	I	G	D	I	V	P	G	P	.	A	L
Template Known Secondary structure			S	S	S							.	.	.		T	T								S						S					S		T	T	S	S					T			B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	S	S	S		.
Template Predicted Secondary structure												.	.	.																																																																	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.				.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	H	K	A	S	Y	E	G	K	V	A	A	E	A	I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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