Job Description P35340 Confidence 99.86% Date Wed Jan 25 15:20:51 GMT 2012 Rank 103 Aligned Residues 289 % Identity 16% Template c1chuA_ PDB info PDB header:flavoenzyme Chain: A: PDB Molecule:protein (l-aspartate oxidase); PDBTitle: structure of l-aspartate oxidase: implications for the2 succinate dehydrogenase/ fumarate reducatse family Resolution 2.20 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.													.	.	.																						.	.	.	.	.	.	.
Query SS confidence																																					.	.													.	.	.																						.	.	.	.	.	.	.
Query Sequence		R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	I	R	T	G	L	M	G	E	R	.	.	F	G	G	Q	I	L	D	T	V	D	I	E	.	.	.	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	.	.	.	.	.	.	.
Query Conservation																																					.	.													.	.	.																						.	.	.	.	.	.	.
Alig confidence																												.									.	.													.	.	.																						.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		E	H	S	C	D	V	L	I	I	G	S	G	A	A	G	L	S	L	A	L	R	L	A	D	Q	H	.	Q	V	I	V	L	S	K	G	P	V	T	E	F	D	E	T	D	S	I	D	S	H	V	E	D	T	L	I	A	G	A	G	I	C	D	R	H	A	V	E	F	V	A	S	N	A	R	S	C	V	Q	W	L
Template Known Secondary structure		S				S							S											T	T	T	S	.							S	S		T	T				S															T	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
																278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.											300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A	A	V	E	.	.	.	.	.	.	.	.	.	.	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	Q	G	V	L	T	T	L	V	S	K	A	L	N	H	P	N	I	R	V	L	E	R	T	N	A	V	D	L	I	V	S	D	K	I	G	L	P	G	T	R	R	V	V	G	A	W	V	W	N	R	N	K	E	T	V	E	T	C	H	A	K	A	V	V	L	A	T	G	G	A	S	K	V	Y	Q	Y	T	T
Template Known Secondary structure				T	T													T	T						S									G	G	G	T	T			S	S		B									T	T	T	T								S										G	G	G	S	S	S	B	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.							.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	.	.	.	.	.	.	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																											.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.
Template Sequence		N	P	D	I	S	S	G	D	G	I	A	M	A	W	R	A	G	C	R	V	A	N	L	E	F	N	Q	F	H	P	T	A	L	Y	H	P	Q	A	R	N	F	L	L	T	E	A	L	R	G	E	G	A	Y	L	.	K	R	P	D	G	T	R	F	M	P	D	F	D	E	R	G	E	L	A	P	R	D	I	V	A
Template Known Secondary structure			G	G	G		S										T	T						T	T											S	T	T		T	T		B								T	T				.			T	T	S		B		G	G	G	T		T	T	G	G	G	S
Template Predicted Secondary structure																																																								.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L	P	N	T	N	W	L	E	.	G	A	V	E	R	N	R	M	G	E	I	I	I
Query Conservation																																																																				.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	A	I	D	H	E	M	K	R	L	G	A	D	C	M	F	L	D	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	P	A	D	F	I	R	Q	H	F	P	M	I	Y	E	K	L	L	G	L	G	I	D	L	T	Q	E	P	V	P	I	V	P	A	A	H	Y	T	C	G	G	V	M	V
Template Known Secondary structure												T		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S																T	T	T			T	T	T	S												S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.																.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.									.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		D	A	K	C	E	T	N	V	K	G	V	F	A	A	G	D	C	T	T	V	P	Y	.	.	.	.	.	.	.	.	K	Q	I	I	I	A	T	G	E	G	A	K	A	S	L	S	A	F	D	Y	L
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	H	G	R	T	D	V	E	G	L	Y	A	I	G	E	V	S	Y	T	G	L	H	G	A	N	R	M	A	S	N	S	L	L	E	C	L	V	Y	G	W	S	A	A	E	D	I	T	R	R	M
Template Known Secondary structure			T	T		B		S	S	B	T					G	G	G				S	S	S	T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions