Phyre 2 alignment of P35340 with c1cf3A

Job Description P35340
Confidence 98.96% Date Wed Jan 25 15:20:51 GMT 2012

Rank 244 Aligned Residues 231

% Identity 13% Template c1cf3A_

PDB info PDB header:oxidoreductase(flavoprotein) Chain: A: PDB Molecule:protein (glucose oxidase); PDBTitle: glucose oxidase from apergillus niger

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	T	G	A	E	K	R	A	A	E	E	L	N	K	R	D	A	Y	D	V	L	I	V	G	S	G	P	A	G	A	A	A	A	I	Y	S	A	R	K	G	.	I	R	T	G	L	M	G	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	I	E	A	S	L	L	T	D	P	K	D	V	S	G	R	T	V	D	Y	I	I	A	G	G	G	L	T	G	L	T	T	A	A	R	L	T	E	N	P	N	I	S	V	L	V	I	E	S	G	S	Y	E	S	D	R	G	P	I	I	E	D	L	N	A	Y	G	D	I	F	G	S	S	V	D	H	A	Y	E	T	V
Template Known Secondary structure					S	B			G	G	G	T	T	T											S											T	T	S	T	T								S	S				T	T	S						B	G	G	G	T	T	T	T	T	T	S	T	T	B
Template Predicted Secondary structure
Template SS confidence
	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

																	245	.	.	.	.	250	.	.	.	.	.	.													.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	G	Q	I	L	D	T	V	D	I	E	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	I	S	V	P	K	T	E	G	Q	K	L	A	G	A	L	K	V	H	V	D	E	Y	D	V	D	V	I	D	S	Q	S	A	S	K	L	I	P	A
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	L	A	T	N	N	Q	T	A	L	I	R	S	G	N	G	L	G	G	S	T	L	V	N	G	G	T	W	T	R	P	H	K	A	Q	V	D	S	W	E	T	V	F	G	N	E	G	W	N	W	D	N	V	A	A	Y	S	L	Q	A	E	R	A	R	A	P	N	A	K	Q	I	A	A	G	H	Y	F	N	A	S
Template Known Secondary structure			T	T	T	S								B		S	T	T	G	G	G	G	T	S			B															T	T			T	T		S																									T					G	G
Template Predicted Secondary structure
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V	E	G	G	L	H	Q	I	E	T	A	S	G	A	V	L	K	A	R	S	I	I	V	A	T	G	A	K	W	R	N	M	N	V	P	G	E	D	Q	Y	R	T	K	G	V	T	Y	C	P	H	C	D	G	P	L	F	K	G	K	R	V	A	V	I	G	G	G	N	S	G	V	E	A	A	I	D	L	A	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template Sequence	C	H	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	T	V	H	A	G	P	R	D	T	G	D	D	Y	S	P	I	V	K	A	L	M	S	A	V	E	D	R	G	V	P	T	K	K	D	F	G	C	G	D	P	H	G	V	S	M	F	P	N	T	L	H	E	D	.	.	.	.	.	.
Template Known Secondary structure	G	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				B					S	S		B		T											T	T	T			B				T	T	S	S										B	S	B		T	T	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.
Template SS confidence
	164	.	.	.																.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

	377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.					.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence	I	V	E	H	V	T	L	L	E	F	A	P	E	M	K	A	D	Q	V	L	Q	D	K	L	R	S	L	K	N	V	D	I	I	L	N	A	Q	T	T	E	V	K	G	D	G	S	.	.	.	.	K	V	V	G	L	E	Y	R	D	R	V	S	G	D	I	H	N	I	E	L	A	G	I	F	V	Q	I	G	L	L
Query Conservation																																															.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	Q	V	R	S	D	A	A	R	E	W	L	L	P	N	Y	Q	R	P	N	L	Q	V	L	T	G	Q	Y	V	G	K	V	L	L	S	Q	N	G	T	T	P	R	A	V	G	V	E	F	G	T	H	K	G	N	T	H	N	V	Y	A	K	H	E	V	L	L	A	A	G	S	A
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.		B	B								T	G	G	G	T	T		T	T						S											S	S	S	S												T	T															S		T	T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

	453	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	N	T	N	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	V	S	P	T	I	L
Template Known Secondary structure	T
Template Predicted Secondary structure
Template SS confidence
	293	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions