Job Description P60546 Confidence 97.78% Date Thu Jan 5 12:06:52 GMT 2012 Rank 210 Aligned Residues 124 % Identity 14% Template c3crqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	Q	G	T	L	Y	I	V	S	A	P	S	G	A	G	K	S	S	L	I	Q	A	L	L	K	T	Q	P	L	Y	D	T	Q	V	S	V	S	H	T	.	.	.	.	.	.	.	.	.	.	T	R	Q	P	R	P	G	E	V	H	G	E	H	Y	F	F	V	N	H	D	E	F	K	E	M	I	S	R	D	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																									.	.	.									.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation					.	.																									.	.	.																																											.	.	.	.	.	.
Template Sequence		L	P	P	.	.	A	I	F	L	M	G	P	T	A	A	G	K	T	D	L	A	M	A	L	A	D	A	L	P	.	.	.	C	E	L	I	S	V	D	S	A	L	I	Y	R	G	M	D	I	G	T	A	K	P	S	R	E	L	L	A	R	Y	P	H	R	L	I	D	I	R	D	P	A	E	.	.	.	.	.	.
Template Known Secondary structure					.	.							S	T	T	S	S										T	T	S		.	.	.								T	T	T	T	B	T	T			T	T	T	T										S				S	S	S		B		T	T	S	.	.	.	.	.	.
Template Predicted Secondary structure					.	.																									.	.	.																																											.	.	.	.	.	.
Template SS confidence
		4	.	.			.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		F	L	E	H	A	E	V	F	G	N	Y	Y	G	T	S	R	E	A	I	E	Q	V	L	A	T	G	V	D	V	F	L	D	I	D	W	Q	G	A	Q	Q	I	R	Q	K	M	P	H	A	R	S	I	F	I	L	P	P	.	S	K	I	E	L	D	R	R	L	R	G	R
Query Conservation																																																										.
Alig confidence		.	.	.																																																						.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	Y	S	A	A	E	F	R	A	D	A	L	A	A	M	A	K	A	T	A	R	G	R	I	P	L	L	V	G	G	T	M	L	Y	Y	K	A	L	L	E	G	L	P	Y	T	V	A	Q	L	A	I	A	P	E	Q	R	Q	V	L	H	A	R	I	A	Q	R
Template Known Secondary structure		.	.	.																					T	T								S														S										S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions