Job Description P60546 Confidence 99.81% Date Thu Jan 5 12:06:52 GMT 2012 Rank 50 Aligned Residues 194 % Identity 11% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.
Predicted Secondary structure																																																		.	.																								.	.	.	.	.	.
Query SS confidence																																																		.	.																								.	.	.	.	.	.
Query Sequence		A	Q	G	T	L	Y	I	V	S	A	P	S	G	A	G	K	S	S	L	I	Q	A	L	L	K	T	Q	P	L	Y	D	T	Q	V	S	V	S	H	T	T	R	Q	P	R	P	G	E	V	.	.	H	G	E	H	Y	F	F	V	N	H	D	E	F	K	E	M	I	S	R	D	A	F	L	.	.	.	.	.	.	E
Query Conservation																																																		.	.																								.	.	.	.	.	.
Alig confidence																																																		.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L	R	N	Q	V	A	L	V	S	Q	N	V	H	L	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S
Template Known Secondary structure			T	T							S	S	T	T	S	S								T	T	T		S			B	S	S					S	S	S	B	T	T	T	S							T	T						S						S	S		B	S	T	T	T	T	S	S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	E	V	F	G	N	Y	Y	G	T	S	R	E	A	I	E	Q	V	L	A	T	G	V	D	V	F	L	D	I	D	W	Q	G	A	Q	Q	I	R	Q	K	M	P	H	A	R	S	I	F	I	L	P	P	S	K	I	E	L	D	R	R	L	R	G	R	G	Q	D	S	E	E	V	I	A	K	R	M	A	Q	A
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N	G	V	L	L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	.
Template Known Secondary structure			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B					T	T	S		S	S										T					T	S			S							T	T	S	S									T	T					T	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	M	S	H	Y	A	E	Y	D	Y	L	I	V	N	D	D	F	D	T	A	L	T	D	L	K	T	I	I	R	A	E	R	L	R	M	S	R	Q	K	Q	R	H	D	A	L	I	S	K
Query Conservation
Alig confidence		.	.	.	.	.																.																		.
Template Conservation		.	.	.	.	.																.																		.
Template Sequence		.	.	.	.	.	L	Q	K	N	R	T	S	L	V	I	A	H	R	L	S	.	T	I	E	K	A	D	E	I	V	V	V	E	D	G	V	I	V	.	E	R	G	T	H	N	D	L	L	E	H
Template Known Secondary structure		.	.	.	.	.	T	T	S	S	S							S	S	G	G	.	G	T	T	T		S	S	B					T	T				.				S	S	S					S
Template Predicted Secondary structure		.	.	.	.	.																.																		.
Template SS confidence
							526	.	.	.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.		.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions