Job Description P60546 Confidence 99.93% Date Thu Jan 5 12:06:52 GMT 2012 Rank 6 Aligned Residues 195 % Identity 11% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	G	T	L	Y	I	V	S	A	P	S	G	A	G	K	S	S	L	I	Q	A	L	L	K	T	Q	P	L	Y	D	T	Q	V	S	V	S	H	T	T	R	Q	P	R	P	G	E	V	H	G	E	H	Y	F	F	V	N	H	D	E	F	K	E	M	I	S	R	D	A	F	L	E	H	A	E	V	F	G	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	Y	R	E	V	G	M	V	F	Q	N	Y	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S
Template Known Secondary structure			T	T								S	T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	G	T	T						S	S					T	T	S								G	G	G	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		Y	G	T	S	R	E	A	I	E	Q	V	L	A	.	T	G	V	D	V	F	L	D	I	D	W	Q	G	A	Q	Q	I	R	Q	K	M	P	H	A	R	S	I	F	I	L	P	P	S	K	I	E	L	D	R	R	L	R	G	R	G	Q	D	S	E	E	V	I	A	K	R	M	A	Q	A	V	A	E	M	S	H	Y
Query Conservation															.
Alig confidence															.																																						.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	.	.	.	.	D	E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E
Template Known Secondary structure					T	T										T	T		G	G	G	T	T	S		G	G	G	S															T	T			S					.	.	.	.		S	T	T	T	T	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	Y	D	Y	L	I	V	N	D	D	F	D	T	A	L	T	D	L	K	T	I	I	R	A	E	R	L	R	M	S	R	Q	K	Q	R	H	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	K	L	V	Q	Y	G	T	P	D	E	V	Y
Template Known Secondary structure											S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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