Job Description P60546 Confidence 98.67% Date Thu Jan 5 12:06:52 GMT 2012 Rank 116 Aligned Residues 192 % Identity 17% Template c2vf7B_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	T	L	Y	I	V	S	A	P	S	G	A	G	K	S	S	L	I	Q	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	V	M	T	S	V	T	G	V	S	G	S	G	K	S	T	L	V	S	Q	A	L	V	D	A	L	A	A	H	F	G	Q	G	S	A	R	L	G	G	D	L	A	Q	I	T	R	L	V	R	V	D	Q	K	P	I	G	R	T	P	R	S	N	M	A	T	Y	T	G	L	F	D	Q	V	R	K	L	F	A	A
Template Known Secondary structure			S	S							S	T	T	S	S						T	T										S									S	S	G	G	G									S	S		S		S	S	T	T								T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		522	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
																						26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	T	Q	P	L	Y	D	T	Q	V	S	V	S	H	T	T	R	Q	P	R	P	G	E	V	H	G	E	H	Y	F	F	V	N	H	D	.	E	F	K	E	M	I	S	R	D	A	F	L	E	H	A	E	V	F	G	N	Y	Y	G	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		T	P	L	A	K	K	R	G	Y	N	A	G	R	F	S	F	N	V	K	G	G	R	C	E	H	C	Q	G	E	G	W	V	M	V	P	S	V	Y	A	P	C	P	V	C	H	G	T	R	Y	N	A	E	T	L	E	V	E	Y	R	G	K	N	I	A	D	V	L	A	L	T	V	D	E	A	H	D	F	F	A	D
Template Known Secondary structure		S	T					S				T	T	S	S		S	S	S	S	S	S	B		S	S	S	T	T														T	T	T	S	S	S		B		T	T	G	G	G			S	S	S								T		B								T	T	T
Template Predicted Secondary structure
Template SS confidence
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		S	R	E	A	I	E	Q	V	L	A	T	G	V	D	V	F	L	D	I	D	.	.	.	.	.	.	.	W	Q	G	A	Q	Q	I	R	Q	K	M	P	H	A	R	S	I	F	I	L	P	P	S	K	I	E	L	D	R	R	L	R	G	R	G	Q	D	S	E	E	V	I	A	K	R	M	A	Q	A	V	A	E	M
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.																												.	.	.	.
Template Conservation																																																								.	.	.	.
Template Sequence		E	S	A	I	F	R	A	L	D	T	L	R	E	V	G	L	G	Y	L	R	L	G	Q	P	A	T	E	L	S	G	G	E	A	Q	R	I	K	L	A	T	E	L	R	R	S	G	R	G	G	T	V	Y	V	L	.	.	.	.	D	E	P	T	T	G	L	H	P	A	D	V	E	R	L	Q	R	Q	L	V	K	L
Template Known Secondary structure																T		T	T	S	B	T	T			G	G	G			S															S	S	S	S							.	.	.	.			S		S	S
Template Predicted Secondary structure																																																								.	.	.	.
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.					.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.							.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		S	H	Y	A	E	Y	D	Y	L	I	V	N	D	D	F	D	T	A	L	T	D	L	K	T	I	I	R	A	.	.	.	.	.	.	E	R	L	R	M	S	R	Q	K	Q	R	H	D	A	L
Query Conservation																														.	.	.	.	.	.
Alig confidence					.															.										.	.	.	.	.	.
Template Conservation					.															.
Template Sequence		V	D	A	.	G	N	T	V	I	A	V	E	H	K	M	Q	V	V	.	A	A	S	D	W	V	L	D	I	G	P	G	A	G	E	D	G	G	R	L	V	A	Q	G	T	P	A	E	V	A
Template Known Secondary structure				T	.	T														.	T	T		S							S	S	S	G	G	G			S						S
Template Predicted Secondary structure					.															.
Template SS confidence
		780	.	.		.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions