Job Description P60546 Confidence 98.51% Date Thu Jan 5 12:06:52 GMT 2012 Rank 128 Aligned Residues 151 % Identity 9% Template c2pt5D_ PDB info PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5 Resolution 2.10 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	V	S	A	P	S	G	A	G	K	S	S	L	I	Q	A	L	L	K	T	Q	P	L	Y	D	T	Q	V	S	V	S	H	T	T	R	Q	P	R	P	G	E	V	H	G	E	H	Y	F	F	V	N	H	D	E	F	K	E	M	I	S	R	D	A	F	L	E	H	A	E	V	F	G	N	Y	Y	G	T	S	R
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	L	I	G	F	X	C	S	G	K	S	T	V	G	S	L	L	S	R	S	L	N	I	P	F	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	E	E	V	Q	K	R	E	G	L	S	I	P	Q	I	F	E	K	K	G	E	A	Y	F	R	K	L	E
Template Known Secondary structure								G	G	G														T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																								.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		E	A	I	E	Q	V	L	A	T	G	V	D	V	F	L	D	I	D	W	Q	G	A	.	.	Q	Q	I	R	Q	K	M	P	H	A	R	S	I	F	I	L	P	P	S	K	I	E	L	D	R	R	L	R	G	R	G	Q	D	S	E	E	V	I	A	K	R	M	A	Q	A	V	A	E	M	S	H	Y	A	E	Y	D
Query Conservation																								.	.
Alig confidence																								.	.																															.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.
Template Sequence		F	E	V	L	K	D	L	S	E	K	E	N	V	V	I	S	T	G	G	G	L	G	A	N	E	E	A	L	N	F	X	K	S	R	G	T	T	V	F	I	D	I	P	F	E	V	F	L	E	R	C	R	P	L	.	.	.	.	.	.	.	.	D	E	I	K	N	L	F	E	E	R	R	K	I	Y	S	K	A	D
Template Known Secondary structure									T	T	S	S	S											T												S																				.	.	.	.	.	.	.	.															T	T	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		165	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		Y	L	I	V	N	D	.	D	F	D	T	A	L	T	D	L	K	T	I	I	R	A	E	R	L
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		I	K	V	K	G	E	K	P	P	E	E	V	V	K	E	I	L	L	S	L	E	G	N	A	L
Template Known Secondary structure							S	S																		T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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