Return to main results Retrieve Phyre Job Id

Job DescriptionP60546
Confidence99.90%DateThu Jan 5 12:06:52 GMT 2012
Rank12Aligned Residues167
% Identity40%Templatec2j41A_
PDB info PDB header:transferaseChain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of staphylococcus aureus guanylate2 monophosphate kinase
Resolution1.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY
Query Conservation 
 
 

 
 
  






   
        
 
 
                        
                   
Alig confidence 




































.









































Template Conservation   

    
 
 







   
              .            
         
                   
Template Sequence  EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISM. TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNY
Template Known Secondary structure 




STTS

TT





.
S


TT

BTTTB

TT
TT
Template Predicted Secondary structure 

















.













Template SS confidence 















































































   4.....10.........20.........30.........40 .........50.........60.........70.........80..
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  YGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYA
Query Conservation                                                   
   
          
         
     
Alig confidence 













































...........................






Template Conservation                    

 
          
   
  
 




...........................  

   
Template Sequence  YGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS. . . . . . . . . . . . . . . . . . . . . . . . . . . KEVEMMN
Template Known Secondary structure  TT


GGG
TTS


...........................
GGGGGG
Template Predicted Secondary structure 













...........................
Template SS confidence 















































































   83......90.........100.........110.........120........ .130.....
 
   162.......170.........180.........190......
Predicted Secondary structure 











Query SS confidence 


































Query Sequence  EYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQR
Query Conservation      

    
  
      

     

      
Alig confidence 


































Template Conservation       

   
  
      

        
    
Template Sequence  LYDYVVVNDEVELAKNRIQCIVEAEHLKRERVEAK
Template Known Secondary structure  G
S
SST

Template Predicted Secondary structure 










Template SS confidence 


































   163......170.........180.........190.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions