 |
Job Description | P0A894 | Confidence | 96.41% | Date | Thu Jan 5 11:07:13 GMT 2012 |
Rank | 117 | Aligned Residues | 33 |
% Identity | 39% | Template | c3pihA_ |
PDB info |
PDB header:hydrolase/dna | Chain: A: PDB Molecule:uvrabc system protein a; |
PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
|
Resolution | 2.90 Å |
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | 20 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
. | 30 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
V | L | M | I | V | S | G | R | S | G | S | G | K | S | V | A | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R | A | L | E | D | M | G | F | Y | C | . |
. |
. |
. |
. |
. |
V | D | N | L | P | V |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
| . | . | . | . | . | . | . | . | . | . |   |   |
|
|
|   |
|
|   |
| . | . | . | . | . | . |
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|   |
|   |
|
|   |
|
Template Sequence |   |
R | L | V | V | I | T | G | V | S | G | S | G | K | S | S | L | A | M | D | T | I | Y | A | E | G | Q | R | R | Y | L | E | S | L | S | T | Y | K | K | P | D | V | D | E | I | E | G | L | S | P |
Template Known Secondary structure |   |
S |  |  |  |  |  |  | S | T | T | S | S | S |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
|
|
|
|
| S |
| S |  |  |  | T |
|
|
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
25 | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|