Job Description P0A894 Confidence 97.56% Date Thu Jan 5 11:07:13 GMT 2012 Rank 96 Aligned Residues 144 % Identity 20% Template c3lv8A_ PDB info PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.																																									.	.	.	.	.	40
Predicted Secondary structure																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	M	I	V	S	G	R	S	G	S	G	K	S	V	A	L	R	A	L	.	E	D	M	G	F	Y	C	V	D	N	L	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	L	P	D	L
Query Conservation																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	I	V	I	E	G	L	E	G	A	G	K	S	T	A	I	Q	V	V	V	E	T	L	Q	Q	N	G	I	D	H	I	T	R	T	R	E	P	G	G	T	L	L	A	E	K	L	R	A	L	V	K	E	E	H	P	G	E	E	L	Q	D	I	T	E	L	L	L	V	Y	A	A	R	V	Q	L	V	E	N	V
Template Known Secondary structure									S	T	T	S																T	T									S	S		S	S												S			T	T	S																						T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		41	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																.	.	.	.	.	.	.	.																							.
Query SS confidence																.	.	.	.	.	.	.	.																							.
Query Sequence		A	R	T	L	A	D	R	E	I	S	A	A	V	S	.	.	.	.	.	.	.	.	I	D	V	R	N	M	P	E	S	P	E	I	F	E	Q	A	M	S	N	L	P	D	.	A	F	S	P	Q	L	L	F	L	D	A	D	R	N	T	L	I	R	R	Y	S	D	T	R	R	L	H	P	L	S	S	K	N	L	S
Query Conservation																.	.	.	.	.	.	.	.																							.
Alig confidence																.	.	.	.	.	.	.	.																							.																										.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.
Template Sequence		I	K	P	A	L	A	R	G	E	W	V	V	G	D	R	H	D	M	S	S	Q	A	Y	Q	G	G	G	R	Q	I	A	P	S	T	M	Q	S	L	K	Q	T	A	L	G	D	F	K	P	D	L	T	L	Y	L	D	I	D	P	K	L	G	L	E	R	E	L	D	R	I	E	.	.	.	.	.	.	.	K	M	D
Template Known Secondary structure								T	T							S									T	T	T	T	T																T	T				S																			T	T	T	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	S	A	I	D	K	E	S	D	L	L	E	P	L	R	S	R	A	D	L	I	V	D	T	S	E	M	S	V	H	E	L	A	E	M	L	R	T	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	F	F	E	R	A	R	E	R	Y	L	E	L	A	N	S	D	D	S	V	V	M	I	D	A	A	Q	S	I	E	Q	V	T	A	D	I	R	R	A	L
Template Known Secondary structure																				T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions