Job Description P0A894 Confidence 97.70% Date Thu Jan 5 11:07:13 GMT 2012 Rank 88 Aligned Residues 142 % Identity 13% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.					.	.	.	.	.	.	.	.																					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		V	L	M	I	V	S	G	R	S	G	S	G	K	S	V	A	L	R	A	L	.	.	.	.	E	D	M	G	F	Y	C	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	L	P	V	V	L	L	P	D	L	A	R	T	L	A	D	R	E	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	Y	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	R	K	K	T	Y	N	D	H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q	E	Q	L	E
Template Known Secondary structure									S	T	T	S													S		T	T	S						S	S		T	T	S											T	T	S																		T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.								.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure																		.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.
Query Sequence		I	S	A	A	V	S	I	D	V	R	N	M	P	E	S	P	.	.	.	.	.	.	.	E	I	F	E	Q	A	M	S	N	L	P	D	A	F	S	P	Q	L	L	F	L	D	A	D	R	N	T	L	I	R	R	Y	S	D	T	R	R	L	H	P	L	S	S	K	N	L	S	L	E	S	A	I	D	K	E	S	D
Query Conservation																		.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	I	T	L	I	V	D	R	Y	A	F	S	G	V	A	Y	A	A	A	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	P	K	P	D	L	V	I	F	L	E	S	G	S	K	E	I	N	R	N	.	.	.	.	.	.	.	.	.	V	G	E	E	I	Y	E	D	V	T	F	Q	Q	K	V	L	Q
Template Known Secondary structure		T	T							S												T	T											T	T	S				S													T	T		.	.	.	.	.	.	.	.	.	B		S	S	T	T		B
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.										.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		L	L	E	P	L	R	S	R	A	D	.	.	L	I	V	D	T	S	E	M	S	V	H	E	L	A	E	M	L	R	T	R	L
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		E	Y	K	K	M	I	E	E	G	D	I	H	W	Q	I	I	S	S	E	F	E	E	D	V	K	K	E	L	I	K	N	I	V
Template Known Secondary structure									T		S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions