Job Description P0A894 Confidence 98.18% Date Thu Jan 5 11:07:13 GMT 2012 Rank 57 Aligned Residues 143 % Identity 20% Template c2pbrB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5 Resolution 1.96 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30																							.	.	.	.	.	.											.	.	.	40	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	I	V	S	G	R	S	G	S	G	K	S	V	A	L	R	A	L	.	E	D	M	G	F	Y	C	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	P	V	V	L	.	.	.	.	.	.	.	.	.	.	L	P	D	L	A	R	T	L	A	D	R	E	I
Query Conservation																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Alig confidence																					.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	A	F	E	G	I	D	G	S	G	K	T	T	Q	A	K	K	L	Y	E	Y	L	K	Q	K	G	Y	F	V	S	L	Y	R	E	P	G	G	T	K	V	G	E	V	L	R	E	I	L	L	T	E	E	L	D	E	R	T	E	L	L	L	F	E	A	S	R	S	K	L	I	E	E	K	I	I	P	D	L	K
Template Known Secondary structure									T	T	S																T	T								S	S		S	S													S																						T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		50	.	.	.	.	.	.	.	.													.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	A	A	V	S	I	D	V	R	.	.	.	.	.	.	.	.	.	.	.	.	N	M	P	E	S	P	E	I	F	E	Q	A	M	S	N	L	P	D	A	F	S	P	Q	L	L	F	L	D	A	D	R	N	T	L	I	R	R	Y	S	D	T	R	R	L	H	P	L	S	S	K	N	L	S	L	E	S	A	I	D
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																																																.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.
Template Sequence		R	D	K	V	V	I	L	D	R	F	V	L	S	T	I	A	Y	Q	G	Y	G	K	G	L	D	V	E	F	I	K	N	L	N	E	F	A	T	R	G	V	K	P	D	I	T	L	L	L	D	I	P	V	D	I	A	L	R	R	L	K	E	K	N	R	F	E	N	K	.	.	.	.	.	E	F	L	E	K	V	R
Template Known Secondary structure		T	T							S										T	T	T	T																T	T				S																		T	T	T						.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.						150	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	S	D	L	L	E	P	L	R	S	R	A	D	L	I	V	D	T	S	E	M	S	V	H	E	L	A	E	M	L	R	T	R	L
Query Conservation
Alig confidence										.												.
Template Conservation										.												.
Template Sequence		K	G	F	L	E	L	A	K	.	E	E	E	N	V	V	V	I	D	A	S	.	G	E	E	E	E	V	F	K	E	I	L	R	A	L
Template Known Secondary structure										.		S	T	T						T	T	.	S
Template Predicted Secondary structure										.												.
Template SS confidence
		157	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions