Job Description P0A894 Confidence 94.42% Date Thu Jan 5 11:07:13 GMT 2012 Rank 137 Aligned Residues 134 % Identity 14% Template c1lw7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae Resolution 2.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.																						30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	L	M	I	V	S	G	R	S	G	S	G	K	S	V	A	L	R	A	L	.	E	D	M	G	F	Y	C	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	L	P	V	V	L	L	P	D	L	A	R	T	L	A	D	R	E	I	S	A	A	V	S	I	D	V	R
Query Conservation																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	K	T	V	A	I	L	G	G	E	S	S	G	K	S	V	L	V	N	K	L	A	A	V	F	N	T	T	S	A	W	E	Y	G	R	E	F	V	F	E	K	L	G	G	D	E	Q	A	M	Q	Y	S	D	Y	P	Q	X	A	L	G	H	Q	R	Y	I	D	Y	A	V	R	H	S	H	K	I	A	F	I	D	T
Template Known Secondary structure											T	T	S													T	T							T	T							S	S	S	S		T	T	S	S		T	T	T																				S	S					S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70									.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90									.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		N	M	P	E	S	P	E	I	F	E	Q	A	.	.	.	.	.	.	.	.	M	S	N	L	P	D	A	F	S	P	Q	L	L	F	L	D	A	D	R	N	.	.	.	.	.	.	.	.	T	L	I	R	R	Y	S	D	T	R	R	L	H	P	L	S	S	K	N	L	S	L	E	S	A	I	D	K	E	S	D	L
Query Conservation														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	F	I	T	T	Q	A	F	C	I	Q	Y	E	G	K	A	H	P	F	L	D	S	X	I	K	E	Y	P	F	D	V	T	I	L	L	K	N	N	T	E	Q	K	Q	R	Q	Q	F	Q	Q	L	L	K	K	L	L	D	K	Y	K	V	P	Y	I	E	I	E	S	P	S	Y	L	D	R	Y	N	Q	V	K	A	V
Template Known Secondary structure															S													S			S													S														G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	P	L	R	S	R	A	D	L	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	K	V	L	N	E	E	E	I	S	E
Template Known Secondary structure						T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions