 |
Job Description | P0A894 | Confidence | 85.61% | Date | Thu Jan 5 11:07:13 GMT 2012 |
Rank | 361 | Aligned Residues | 93 |
% Identity | 15% | Template | c1iqpF_ |
PDB info |
PDB header:replication | Chain: F: PDB Molecule:rfcs; |
PDBTitle: crystal structure of the clamp loader small subunit from2 pyrococcus furiosus
|
Resolution | 2.80 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . | |
|
|
|
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |
|
|
|
|  |  | . | . | . | . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | I | V | S | G | R | S | G | S | G | K | S | V | A | L | R | A | L | . |
. |
. |
. |
. |
. |
E | D | M | G | F | Y | C | V | . |
. |
. |
. |
. |
D | N | L | P | V | V | L | L | P | D | L | A | R | T | L | A | D | R | E | I | . |
. |
. |
. |
. |
S | A | A | V | S | I | D | V | R | N | M | P | E | S | P | E | I | F |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|   |   |
| . | . | . | . | . | . |
|
|   |
|
|   |
|
| . | . | . | . | . |
|
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |
|
|
|
|   |
|
|
|   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | L | F | A | G | P | P | G | V | G | K | T | T | A | A | L | A | L | A | R | E | L | F | G | E | N | W | R | H | N | F | L | E | L | N | A | S | D | E | R | G | I | N | V | I | R | E | K | V | K | E | F | A | R | T | K | P | I | G | G | A | S | F | K | I | I | F | L | D | E | A | D | A | L | T | Q | D | A | Q | Q |
Template Known Secondary structure |   |
 |  |  |  | S |
| T | T | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  |  | T | T | T | S | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S | S | S |
| S |
|  |  |  |  |  |  | T | G | G | G | S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
49 | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | Q | A | M | S | N | L | P | D | A | F | S | P | Q | L | L | F | L | D | A | D | R | N | T | L | I | R | R | Y |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | L | R | R | T | M | E | M | F | S | S | N | V | R | F | I | L | S | C | N | Y | S | S | K | I | I | E | P | I |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  | S |
| G | G | G | S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|