Job Description P10384 Confidence 98.95% Date Thu Jan 5 11:32:12 GMT 2012 Rank 16 Aligned Residues 169 % Identity 8% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		W	G	F	G	W	N	A	G	I	L	Y	E	L	D	K	.	N	N	R	Y	A	L	T	Y	R	S	E	V	K	I	D	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y	L	T	L	N	L	P	E	M	W	E	V	S	G	Y	N	R	V
Query Conservation																	.
Alig confidence																	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		K	S	K	Q	W	E	G	A	F	E	G	L	T	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	.
Template Known Secondary structure															T	T																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T																					.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.																						.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	W	T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N	R	S	I	S	I	.	.
Query Conservation																																																																																.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.																											.																										.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	.	.	.	.	.	.	.	.	.	.	.	.	A	R	N	A	I	T	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	.	Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T
Template Known Secondary structure			T	T												.	.	.	.	.	.	.	.	.	.	.	.				T	T	T			B		T	T			S												.	T	T																			S	S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.	.	.													.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
			387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G	T	N	F	N	Y	A	F
Query Conservation		.
Alig confidence		.																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	M	G	G	V	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	N	L	F	D	K	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure																		S	S	S	S									S	T	T					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.														.	.	.	.	.	.	580	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions