Job Description P10384 Confidence 21.54% Date Thu Jan 5 11:32:12 GMT 2012 Rank 59 Aligned Residues 148 % Identity 11% Template c3ohnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain Resolution 3.01 Å

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		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.												.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	M	W	E	V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	.	.	.	.	.	.	.	.	.	.	.	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	W	T
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	D	R	Y	R	A	F	N	F	G	I	G	K	N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	G	T	N	I	Q
Template Known Secondary structure														G	G	G											S	S														T	T															T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.											380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.
Query Sequence		F	R	T	G	I	A	F	D	D	S	P	V	P	A	.	.	.	.	.	.	.	.	.	.	Q	N	R	S	I	S	I	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A
Query Conservation																.	.	.	.	.	.	.	.	.	.
Alig confidence			.													.	.	.	.	.	.	.	.	.	.
Template Conservation			.
Template Sequence		L	.	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	G	T	D	Y	Y	N	L	A	Y	N	K	R	G	K	L	Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S	N	V	D	E	Q	F	Q	A	G	L	N	T	A	F
Template Known Secondary structure			.								T	T								S	S		S									T	T	S															T	T	T													S	S	S
Template Predicted Secondary structure			.
Template SS confidence
		431		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
		436	.	.	.	440	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	F	G	T	N	F	N	Y	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	I	N	W	T	L	S	Y	S
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		526	.	.	.	530	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions