Job Description P10384 Confidence 100.00% Date Thu Jan 5 11:32:12 GMT 2012 Rank 3 Aligned Residues 391 % Identity 17% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		A	G	F	Q	L	N	E	F	S	S	S	G	L	G	R	A	Y	S	G	E	G	A	I	A	D	D	A	G	N	V	S	R	N	P	A	L	I	T	M	F	D	.	R	P	T	F	S	A	G	A	V	Y	I	D	P	D	V	N	I	S	G	T	S	P	S	G	R	S	L	K	A	D	N	I	A	P	T	A	W	V
Query Conservation																																											.
Alig confidence																								.																			.																			.	.	.	.	.	.	.	.
Template Conservation																								.																																						.	.	.	.	.	.	.	.
Template Sequence		Q	V	F	D	L	E	G	Y	G	A	I	S	R	A	M	G	G	T	S	S	S	Y	.	Y	T	G	N	A	A	L	I	S	N	P	A	T	L	S	F	A	P	D	G	N	Q	F	E	L	G	L	D	V	V	T	T	D	I	K	V	H	.	.	.	.	.	.	.	.	G	A	E	A	K	S	S	T	P	Y	V	G
Template Known Secondary structure			S	S						S						T	T	T			S	S	S	.			G	G	G	G	G	G	T		T	T	G	G	G	G	S		S	S						B						B						.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																								.																																						.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60									.	.	.	.	.	.	.	.	.	70	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.
Query Sequence		P	N	M	H	F	V	A	P	I	N	D	Q	F	G	W	G	A	S	I	T	S	N	Y	G	L	A	T	E	F	N	D	T	.	.	.	.	.	.	.	.	Y	A	G	G	S	V	G	G	T	T	D	L	E	T	M	N	L	N	L	S	G	A	Y	R	L	N	N	A	W	S	F	G	L	G	F	N	A	V	Y	A
Query Conservation																																		.	.	.	.	.	.	.	.
Alig confidence													.																					.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		P	Q	L	S	Y	V	A	Q	L	D	D	.	W	R	F	G	A	G	L	F	V	S	S	G	L	G	T	E	Y	G	S	K	S	F	L	S	Q	T	E	N	G	I	Q	T	S	F	D	N	S	S	R	L	I	V	L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T
Template Known Secondary structure											T	T	.																			T	T	S	G	G	G			T	T	T																								S	S	S	S
Template Predicted Secondary structure													.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	K	I	E	R	F	A	G	D	L	G	Q	L	V	A	G	Q	I	M	Q	S	P	A	G	Q	T	Q	Q	G	Q	A	L	A	A	T	A	N	G	I	D	S	N	T	K	I	A	H	L	N	G	N	Q	W	G	F	G	W	N	A	G	I	L	Y	E	L	D	K	N	N	R	Y	A	L	T	Y	R	S	E	V
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence		S	L	N	L	E	L	L	L	.	P	S	S	Q	V	G	A	L	T	A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H	F	S	L	S	A	G	G	A	V	D	A	V	G	W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	Y	N	F	K	T
Template Known Secondary structure										.											T	T					S						T	T	T	S	G	G	G												T	T																S	S	S											B
Template Predicted Secondary structure										.
Template SS confidence
		161	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		K	I	D	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y	L	T	L	N	L	P	E	M	W	E	V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																							.	.	.	.	.	.																																																			.	.	.
Template Conservation																							.	.	.	.	.	.
Template Sequence		S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	G	D	G	A	V	L	.	.	.	.	.	.	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	T	L	G	L	A	H	Q	F	N	E	R	W	V	V	A	A	D	I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S
Template Known Secondary structure																	T	T	S				.	.	.	.	.	.													B												S	S	S	S													T	T			S
Template Predicted Secondary structure																							.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.							.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	W	T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N	R	S	I	S	I	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S
Query Conservation
Alig confidence																																															.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		Q	L	G	G	I	D	V	A	L	P	H	R	Y	Q	D	I	T	V	A	S	I	G	T	A	Y	K	Y	N	N	D	L	T	L	R	A	G	Y	S	Y	A	Q	L	I	L	P	.	.	.	.	.	.	V	I	P	A	Y	L	K	R	H	V	T	F	G	G	E	Y	D	F	D	K	D	S	R	I	N	L	A	I	S
Template Known Secondary structure		S	S																									S	S	S	S															T	.	.	.	.	.	.	T	S					S											S	S	S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.							.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G	T	N	F	N	Y	A	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		F	G	L	R	E	R	V	M	L	R	Q	S	H	S	Q	I	N	.	.	.	.	.	.	.	A	V	V	S	Y	S	K	N	F
Template Known Secondary structure																B			.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.								.	.	.	.	.	420	.	.	.