Job Description P10384 Confidence 100.00% Date Thu Jan 5 11:32:12 GMT 2012 Rank 4 Aligned Residues 373 % Identity 18% Template c3bryB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Resolution 3.20 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		F	Q	L	N	E	F	S	S	S	G	L	G	R	A	Y	S	G	E	G	A	I	A	D	D	A	G	N	V	S	R	N	P	A	L	I	T	M	F	.	D	R	P	T	F	S	A	G	A	V	Y	I	D	P	D	V	N	I	S	G	T	S	P	S	G	R	S	L	K	A	D	N	I	A	P	T	A	W	V	P	N
Query Conservation																																								.
Alig confidence																						.																		.																				.	.	.	.
Template Conservation																						.																																						.	.	.	.
Template Sequence		F	N	L	E	G	F	G	P	V	S	R	A	M	G	G	T	G	A	A	F	.	D	I	G	P	A	A	M	M	E	N	P	A	T	L	G	L	M	G	E	G	R	H	F	S	L	G	L	D	V	V	S	T	D	I	K	V	T	.	.	.	.	T	A	S	S	G	N	H	G	N	N	N	G	P	Y	F	A	P	Q
Template Known Secondary structure			S		S		S							T	T	T			S	S	S	.				G	G	G	G	G	S		G	G	G	T	T	S	S		S																			.	.	.	.		B			T	T		S	S	S	S
Template Predicted Secondary structure																						.																																						.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.									.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.
Query Sequence		M	H	F	V	A	P	I	N	D	Q	F	G	W	G	A	S	I	T	S	N	Y	G	L	A	T	E	F	N	D	.	.	.	.	.	.	.	.	T	Y	A	G	G	S	V	G	G	T	T	D	L	E	T	M	N	L	N	L	S	G	A	Y	R	L	N	N	A	W	S	F	G	L	G	F	N	A	V	Y	A	R	A
Query Conservation																															.	.	.	.	.	.	.	.
Alig confidence								.																							.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		T	A	F	V	Y	R	.	Q	G	R	Y	A	F	G	A	G	I	F	A	E	G	G	L	G	T	Q	Y	G	G	S	S	F	L	S	R	T	S	N	G	V	D	T	G	L	D	Q	F	S	R	L	L	V	L	R	V	P	F	S	A	A	Y	H	V	T	D	K	L	T	V	G	A	S	V	D	A	V	W	T	S	L
Template Known Secondary structure								.		T	T																			S	S	S	B	T	T	B		S	S	S				S	S																			S	S	S	S
Template Predicted Secondary structure								.
Template SS confidence
		85	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	E	R	F	A	G	D	L	G	Q	L	V	A	G	Q	I	M	Q	S	P	A	G	Q	T	Q	Q	G	Q	A	L	A	A	T	A	N	G	I	D	S	N	T	K	I	A	H	L	N	G	N	Q	W	G	F	G	W	N	A	G	I	L	Y	E	L	D	K	N	N	R	Y	A	L	T	Y	R	S	E	V	K	I
Query Conservation
Alig confidence																															.	.	.	.	.
Template Conservation																															.	.	.	.	.
Template Sequence		N	L	G	T	L	L	D	V	S	Q	I	G	T	L	A	G	Q	G	R	V	S	G	T	L	V	P	T	L	L	.	.	.	.	.	G	V	P	G	L	S	G	G	Y	I	D	F	S	G	V	Q	A	W	G	I	G	G	R	L	G	L	T	Y	Q	V	T	P	D	T	R	I	G	A	A	Y	Q	A	K	T	H	V
Template Known Secondary structure									S		S	S	S	S	T	T	T	S	S	S				T	T	T	T	T	T	T	.	.	.	.	.	S	S	S			S																										T	T											B	B
Template Predicted Secondary structure																															.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.						.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.						.	.
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		D	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y	L	T	L	N	L	P	E	M	W	E	V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	.	.	.	.	.	T	S
Query Conservation																																																																											.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.
Template Sequence		G	D	L	T	G	Q	A	T	L	.	.	.	.	.	.	.	.	.	.	S	A	V	G	N	I	P	L	K	G	D	V	T	V	R	N	F	Q	M	P	A	Q	L	T	V	G	I	S	H	Q	F	N	D	Q	L	S	V	S	A	D	Y	Q	R	V	F	W	S	S	V	M	K	D	M	N	V	G	F	V	Q	S	G
Template Known Secondary structure											.	.	.	.	.	.	.	.	.	.	B																		B												S	S	S	S												G	G	G			S									S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.											.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	W	T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N	R	S	I	S	I	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	N	L	D	L	S	L	P	Q	N	Y	R	D	I	S	V	F	G	I	G	A	E	Y	R	Y	N	A	K	W	T	F	R	G	G	F	H	Y	A	Q	E	T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	G	G	V	S	Y	A	I	G	K	N	D	V	I	D	F	A	L	S
Template Known Secondary structure		S																												T	T																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S	T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.																.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G	T	N	F	N	Y	A	F
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	L	R	K	T	.	.	.	.	.	.	.	.	.	.	S	V	T	H	S	Q	V	N	A	V	I	A	Y	Q	K	R	F
Template Known Secondary structure						B		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		400	.	.	.	.	.											.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.