Job Description P10384 Confidence 2.32% Date Thu Jan 5 11:32:12 GMT 2012 Rank 77 Aligned Residues 343 % Identity 7% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		M	F	D	R	P	T	F	S	A	G	A	V	Y	I	D	P	D	V	N	I	S	G	T	S	P	S	G	R	S	L	K	A	D	N	I	A	P	T	A	W	V	P	N	M	H	F	V	A	.	.	.	P	I	N	D	Q	F	G	W	G	A	S	I	T	S	N	Y	G	L	A	T	E	F	N	D	T	Y	A	G	G
Query Conservation																																																		.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	E	D	A	K	T	D	L	V	L	R	N	Y	Y	F	N	R	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	D	E	W	A	Q	G	F	I	L	K	F	S	S	G	Y	T	P	G	T	V	G	V	G	L	D	A	I	G	L	F	G	V	K	L	N	N	S	E	L	L	P	L	H
Template Known Secondary structure				S	S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			S	S	S	S																		S	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	G	G	T	T	D	L	E	T	M	N	L	N	L	S	G	A	Y	R	L	N	N	A	W	S	F	G	L	G	F	N	A	V	Y	A	R	A	K	I	E	R	F	A	G	D	L	G	Q	L	V	A	G	Q	I	M	Q	S	P	A	G	Q	T	Q	Q	G	Q	A	L	A	A	T	A	N	G	I	D	S	N	T
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		A	A	D	N	Y	G	R	V	.	.	.	.	.	G	V	A	A	K	L	R	V	S	A	S	E	L	K	I	G	E	M	L	P	D	I	P	L	L	R	Y	D	D	G	R	L	L	P	Q	T	F	R	G	F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D
Template Known Secondary structure				S						.	.	.	.	.									S	S													T	T						S	S	S	S														S	T	T														T	T		S	S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.						.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
						221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure		.	.	.	.																								.																	.	.	.	.
Query SS confidence		.	.	.	.																								.																	.	.	.	.
Query Sequence		.	.	.	.	K	I	A	H	L	N	G	N	Q	W	G	F	G	W	N	A	G	I	L	Y	E	L	D	.	K	N	N	R	Y	A	L	T	Y	R	S	E	V	K	I	D	.	.	.	.	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y
Query Conservation		.	.	.	.																								.																	.	.	.	.
Alig confidence		.	.	.	.																								.																	.	.	.	.
Template Conservation
Template Sequence		M	Q	D	L	S	A	W	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G	A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G	A	A	R	A	G
Template Known Secondary structure			B				B	T	T		T	T	S			S												T	T	T	T											T	T	T															T	T																T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.				.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.
Predicted Secondary structure																																																					.	.	.																			.	.	.	.
Query SS confidence																																																					.	.	.																			.	.	.	.
Query Sequence		L	T	L	N	L	P	E	M	W	E	V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	T	L	F	Q	K	.	.	.	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	.	.	.	.	D	D	N	W
Query Conservation																																																					.	.	.																			.	.	.	.
Alig confidence																		.	.	.																																	.	.	.																			.	.	.	.
Template Conservation																		.	.	.
Template Sequence		E	I	D	S	H	T	V	Y	G	L	F	S	A	G	I	G	.	.	.	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L
Template Known Secondary structure																	T	.	.	.	T													S	S					B	T	T			G	G	G	S	T	T		B	T	T	B				S	B	T												G	G	G	G	T		T	T
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.					.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure																																									.	.	.	.
Query SS confidence																																									.	.	.	.
Query Sequence		T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N	R	S	I	S	I	P	D	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	.	.	.	.	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G	T
Query Conservation																																									.	.	.	.
Alig confidence																				.	.	.	.	.																	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	M	V	R	Y	G	H	G	S	N	A	T	T	K	A	G	S	.	.	.	.	.	G	G	K	E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	H	A	S	N	.	.	.	.	.	.	.	.	.	.	.	.	R	R	S	F	N	S	D	F	D	Q	T	R	L
Template Known Secondary structure														B		S	S		S	.	.	.	.	.																	S	S	S	S	T	T											.	.	.	.	.	.	.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																				.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.						.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.													370	.	.	.	.	.	.	.	.	.	380	.	.
		441	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	N	Y	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	S	Y	P	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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