Job Description P21151 Confidence 99.24% Date Thu Jan 5 11:37:50 GMT 2012 Rank 101 Aligned Residues 239 % Identity 19% Template c3lmaC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:stage v sporulation protein ad (spovad); PDBTitle: crystal structure of the stage v sporulation protein ad2 (spovad) from bacillus licheniformis. northeast structural3 genomics consortium target bir6. Resolution 1.99 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	L	S	A	H	L	M	R	S	L	L	A	R	N	P	A	L	E	A	A	A	L	D	D	I	Y	W	G	C	V	Q	Q	T	L	E	Q	G	F	N	I	A	R	N	A	A	L	L	A	E	V	P	H	S	V	P	A	V	T	V	N	R	L	C	G	S	S	M	Q	A	L	H	D	A	A	R	M	I	M
Query Conservation
Alig confidence																.																.	.	.	.																			.	.	.	.
Template Conservation																.																.	.	.	.																			.	.	.	.
Template Sequence		E	R	K	L	X	E	D	A	V	Q	S	A	L	S	.	K	Q	N	L	K	K	E	D	I	D	I	F	L	A	G	.	.	.	.	D	L	L	N	Q	N	V	T	A	N	Y	V	A	R	H	L	K	I	.	.	.	.	P	F	L	C	L	F	G	A	C	S	T	S	X	E	S	I	A	I	S	S	A	L	I	D
Template Known Secondary structure																.		T	T			G	G	G		S						.	.	.	.		T	T		S	S	S	S									T		.	.	.	.								S	T	T
Template Predicted Secondary structure																.																.	.	.	.																			.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		107	.	.	110	.	.	.	.	.							.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence		T	G	D	A	Q	A	C	L	V	.	.	.	.	.	.	G	G	V	E	H	M	G	H	V	P	M	S	H	G	V	D	F	H	P	G	L	S	R	N	V	A	K	A	A	G	M	M	G	L	T	A	E	M	L	A	R	M	H	G	I	S	R	E	M	Q	D	A	F	A	A	R	S	H	A	R	A	W	A	A	T
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	F	A	K	R	A	L	A	A	T	S	S	H	N	A	T	A	E	R	Q	F	R	Y	P	T	E	Y	G	G	Q	K	P	G	T	A	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	S		S										T	T	T	G	G	G	G	T				G	G	G	T					S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	A	A	F	K	N	E	I	I	P	T	G	G	H	D	A	D	G	V	L	K	Q	F	N	Y	D	E	V	I	R	P	E	T	T	V	E	A	L	A	T	L	R	P	A	F	D	P	V	N	G	M	V	T	A	G	T	S	S	A	L	S	D	G	A	A	A	M	L	V	M	S	E	S	R	A	H	E	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	T	G	S	G	A	V	V	L	S	Q	.	.	.	.	.	.	Q	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
																																																														164	.	.	.	.	.	170	.	.	.	.	.							.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.	.	.					.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.														.	.	.	.																																	.	.	.								.	.
Query SS confidence																	.	.	.	.														.	.	.	.																																	.	.	.								.	.
Query Sequence		L	K	P	R	A	R	V	R	S	M	A	V	V	G	C	.	.	.	.	D	P	S	I	M	G	Y	G	P	V	P	A	S	.	.	.	.	K	L	A	L	K	K	A	G	L	S	A	S	D	I	G	V	F	E	M	N	E	A	F	A	A	Q	I	L	P	C	I	K	.	.	.	D	L	G	L	I	E	Q	.	.
Query Conservation																	.	.	.	.														.	.	.	.																																	.	.	.								.	.
Alig confidence																	.	.	.	.														.	.	.	.																																	.	.	.								.	.
Template Conservation
Template Sequence		G	G	I	K	I	T	S	A	T	V	G	R	V	I	D	L	G	I	T	D	S	Q	D	X	G	S	A	X	A	P	A	A	A	D	T	I	K	Q	H	L	E	D	L	G	R	T	P	D	D	Y	D	L	I	L	T	G	D	L	S	G	V	G	S	P	I	L	K	D	L	L	K	E	E	G	I	N	V	G	T	K
Template Known Secondary structure			S												B							T	T																						T			G	G	G		S					S	S																T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
			328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.														.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	I	D	E	K	I	N	L	N	G	G	A	I	A	L	G	H	P	L	G	C	S	G	A	R	I	S	T	T	L	L	N	L	M	E	R	K	D	V	Q	F	G	L	A	T	M	C	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Q	G	I	A	T	V	F	E	R
Query Conservation		.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.															.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.
Template Sequence		H	N	D	C	G	L	X	I	Y	T	P	D	S	G	C	.	.	.	.	A	C	S	A	V	V	T	F	A	H	I	F	K	E	I	E	A	G	R	L	N	R	V	L	V	V	A	T	G	A	L	L	S	P	T	I	I	Q	Q	K	E	S	I	P	C	I	A	H	G	V	V	F	E	R
Template Known Secondary structure					G	G	G	T	S	S							.	.	.	.										T							T	T	S		S																		T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions